OR5T1 Olfactory Receptor
| Gene Symbol | OR5T11 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | T |
| Pseudogene | No |
| CORP pseudogene probability score | 0.03 (functional) |
| Aliases | OR11-179, HsOR11.11.56 |
| External Ids | HGNC: 14821 GeneBank: AB065962, BK004336, NM_001004745 |
| Build #39 labels | OR5T1P |
| Chromosomal location | 11:56,275,705-56,276,616 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5T3 | 83.23% | 310 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5T1B | 82% | 319 |
| Mouse | Or5t9 | 76% | 315 |
| Rat | Or5t9 | 76% | 315 |
| Cow | OR5T1B | 78% | 319 |
| Orang | OR9S18 | 53% | 303 |
| Horse | OR5T30 | 79% | 319 |
| Chimp | OR5T3 | 85% | 310 |
| Chimp | OR5T2C | 84% | 313 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | BC136993 |
Sequence information
| Nucleotide sequence |
ATGTTTATATTAATAAGCTTCACAGAAGAATTTGATGTGCAAGTCTTCCTATTTTTATTA TTTTTAGCAATCTATCTATTCACTCTAATAGGCAATTTAGGGCTGGTTGTACCGATCATT GGGGATTTCTGGCTTCACAGCCCAATGTACTATTTTCTTGGTGTTTTATCATTCTTGGAT GTCTGCTATTCTACAGTTGTCACTCCAAAAATGTTGGTCAATTTCCTGGCAAAAAATAAA TCTATTTCATTTCTTGGATGTGCAACACAGATGTTTCTTGCTTGTACTTTTGGAACCACA GAATGCTTTCTCTTGGCTGCAATGGCTTATGATCGCTATGTAGCCATCTACAACCCTCTC CTGTATTCAGTGAGCATGTCACCCAGAGTCTATGTGCCACTCATCACTGCTTCCTATGTT GCTAGCATTTTACATGCTACTATACATACAGTGGCTACATTTAGCCTGTCCTTCTGTGGA TCCAATGAAATTAGGCATGTCTTTTGTAATATGCCTCCTCTGCTTGCTATTTCTTGTTCT GACACTCACGTAATCCAGCTTCTATTCTTCTACTTTGTGGGCTCTATTGAGATAGTCACT ATCCTGATTGTCCTGATCTCCTATGGTTTTATTCTGTTGGCCATTCTGAAGATGCAGTCT GCTGAAGGGAGGAGAAAAGTCTTCTCTACATGTGGAGCTCACCTAACTGGAGTGACAATT TATCATGGGACAATCCTCTTCATGTATGTGAGACCAAGTTCCAGCTACACTTCGGACAAT GACATGATAGTGTCAATATTTTATACCATTGTGATTCCCATGCTGAATCCCATCATCTAC AGTTTGCGGAACAAAGATGTAAAGGAGGCAATCAAAAGATTGCTTGTGAGAAATTGGTTC ATAAATAAGTTA |
| Conceptual translation |
MDLYKLQLNNFTEVTMFILISFTEEFDVQVFLFLLFLAIYLFTLIGNLGLVVPIIGDFWL HSPMYYFLGVLSFLDVCYSTVVTPKMLVNFLAKNKSISFLGCATQMFLACTFGTTECFLL AAMAYDRYVAIYNPLLYSVSMSPRVYVPLITASYVASILHATIHTVATFSLSFCGSNEIR HVFCNMPPLLAISCSDTHVIQLLFFYFVGSIEIVTILIVLISYGFILLAILKMQSAEGRR KVFSTCGAHLTGVTIYHGTILFMYVRPSSSYTSDNDMIVSIFYTIVIPMLNPIIYSLRNK DVKEAIKRLLVRNWFINKL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | NS | C/T | P/L | 1000GP (YRI, YRI) |
| 11 | 56,043,293 | 56,043,293 | NS | C/T | P/L | rs7126079 (DbSNP) |
| 11 | 56,043,604 | 56,043,604 | NS | A/G | S/G | rs12360890 (DbSNP) |
| 11 | 56,043,702 | 56,043,702 | SYN | C/G | L/L | rs7125697 (DbSNP) |
| 11 | 56,043,745 | 56,043,745 | NS | G/C | V/L/F | rs72472119 (DbSNP) |
| 11 | 56,276,128 | 56,276,128 | NS | A/G | S/G | 1000GP (CEU, CHBJPT) |
| 11 | 56,276,226 | 56,276,226 | SYN | G/C | L/L | 1000GP (CEU) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 52 (Hasin) | |||
| 11 | 56,030,078 | 56,048,002 | CopyNumber | Variation_75650 (DGV) |
| 11 | 56,034,758 | 56,048,002 | CopyNumber | Variation_85796 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| P60L | L94V | S164G | H205Q | % Freq | CORP | |
|---|---|---|---|---|---|---|
| 1 | P | L | S | H | 60.75 | 0.312 |
| 2 | P | L | G | H | 38.17 | 0.312 |
| 3 | P | V | G | H | 0.54 | 0.312 |
| 4 | L | L | S | H | 0.31 | 0.078 |
| 5 | P | L | S | Q | 0.15 | 0.312 |
| 6 | L | L | G | H | 0.08 | 0.078 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR5T1.aApr07-unspliced | main_exon | 5UTR | chr11 | 56,275,639 | 56,275,705 | + |
| CDS | chr11 | 56,275,705 | 56,276,616 | + | ||
| 3UTR | chr11 | 56,276,616 | 56,276,619 | + | ||