OR5T3 Olfactory Receptor
| Gene Symbol | OR5T31 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | T |
| Pseudogene | No |
| CORP pseudogene probability score | 1 (pseudogene) |
| Aliases | OR11-178, HsOR11.11.55, ORL3338 |
| External Ids | HGNC: 15297 GeneBank: AB065837, BK004335, NM_001004747 ORDB: ORL3338 |
| Build #39 labels | OR5T3 |
| Chromosomal location | 11:56,252,200-56,253,219 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5T1 | 83.23% | 310 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5T1 | 84% | 316 |
| Dog | OR5T1B | 83% | 315 |
| Mouse | Or5t5 | 79% | 318 |
| Rat | Or5t5b | 77% | 318 |
| Cow | OR5T1 | 79% | 316 |
| Orang | OR5P2 | 50% | 329 |
| Horse | OR5T30 | 80% | 316 |
| Chimp | OR5T3B | 96% | 295 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10905_at |
Sequence information
| Nucleotide sequence |
ATGGACTCCACTTTCACAGGCTATAACCTTTATAACCTGCAAGTAAAAACTGAAATGGAC AAGTTGTCATCAGGTTTGGATATATACAGGAATCCACTGAAGAACAAGACTGAAGTCACC ATGTTTATATTGACAGGCTTCACAGATGATTTTGAGCTGCAAGTCTTCCTATTTTTACTA TTTTTTGCAATCTATCTCTTTACCTTGATAGGCAATTTAGGGCTGGTTGTGTTGGTCATT GAGGATTCCTGGCTCCACAACCCCATGTATTATTTTCTTAGTGTTTTATCATTCTTGGAT GCTTGCTATTCTACAGTTGTCACTCCAAAAATGTTGGTCAATTTCCTGGCAAAAAATAAA TCCATTTCATTTATCGGATGTGCAACACAGATGCTTCTTTTTGTTACTTTTGGAACTACA GAATGTTTTCTCTTGGCTGCAATGGCTTATGATCACTATGTAGCCATCTACAACCCTCTC CTGTATTCAGTGAGCATGTCACCCAGAGTCTATGTGCCACTCATCACTGCTTCCTACGTT GCTGGCATTTTACATGCTACTATACATATAGTGGCTACATTTAGCCTGTCCTTCTGTGGA TCCAATGAAATTAGGCATGTCTTTTGTGATATGCCTCCTCTCCTTGCTATTTCTTGTTCT GACACTCACACAAACCAGCTTCTACTCTTCTACTTTGTGGGTTCTATTGAGATAGTCACT ATCCTGATTGTCCTCATTTCCTGTGATTTCATTCTGTTGTCCATTCTGAAGATGCATTCT GCTAAGGGAAGGCAAAAGGCCTTCTCTACATGTGGCTCTCACCTAACTGGAGTGACAATT TATCATGGAACAATTCTCGTCAGTTATATGAGACCAAGTTCCAGCTATGCTTCAGACCAT GACATCATAGTGTCAATATTTTACACAATTGTGATTCCCAAGTTGAATCCCATCATCTAT AGTTTGAGGAACAAAGAAGTAAAAAAGGCAGTGAAGAAAATGTTGAAATTGGTTTACAAA |
| Conceptual translation |
MDSTFTGYNLYNLQVKTEMDKLSSGLDIYRNPLKNKTEVTMFILTGFTDDFELQVFLFLL FFAIYLFTLIGNLGLVVLVIEDSWLHNPMYYFLSVLSFLDACYSTVVTPKMLVNFLAKNK SISFIGCATQMLLFVTFGTTECFLLAAMAYDHYVAIYNPLLYSVSMSPRVYVPLITASYV AGILHATIHIVATFSLSFCGSNEIRHVFCDMPPLLAISCSDTHTNQLLLFYFVGSIEIVT ILIVLISCDFILLSILKMHSAKGRQKAFSTCGSHLTGVTIYHGTILVSYMRPSSSYASDH DIIVSIFYTIVIPKLNPIIYSLRNKEVKKAVKKMLKLVYK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 56,020,438 | 56,020,438 | NS | A/C | I/L | rs61747480 (DbSNP) |
| 11 | 56,020,695 | 56,020,695 | NS | A/C | K/N | rs61753411 (DbSNP) |
| 11 | 56,020,615 | 56,020,615 | NS | A/G | K/E | rs73474358 (DbSNP) |
| 11 | 56,020,244 | 56,020,244 | NS | C/T | T/I | rs61746551 (DbSNP) |
| 11 | 56,019,925 | 56,019,925 | NS | G/T | G/W | rs17150243 (DbSNP) |
| 11 | 56,020,533 | 56,020,533 | SYN | C/T | L/L | rs61750919 (DbSNP) |
| 11 | 56,252,294 | 56,252,294 | NS | C/T | P/L | 1000GP (CEU) |
| 11 | 56,252,299 | 56,252,299 | NS | A/C | K/Q | 1000GP (CEU) |
| 11 | 56,252,635 | 56,252,635 | NS | G/T | A/S | 1000GP (CEU) |
| 11 | 56,252,768 | 56,252,768 | NS | T/C | I/T | 1000GP (CEU) |
| 11 | 56,252,449 | 56,252,449 | NS | T/G | W/G | 1000GP (CHBJPT) |
| 11 | 56,252,573 | 56,252,573 | NS | T/C | I/T | 1000GP (CHBJPT) |
| 11 | 100 | -100 | NS | A/C | I/L | 1000GP (YRI) |
| 11 | 100 | -100 | SYN | C/T | L/L | 1000GP (YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 47 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| K34Q | W84G | I125T | A146S | I190T | I255L | K340N | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|
| 1 | K | W | I | A | I | I | K | 86.25 | 1.000 |
| 2 | K | W | I | A | T | I | K | 6.91 | 1.000 |
| 3 | K | G | I | A | I | I | K | 3.53 | 1.000 |
| 4 | K | W | T | A | I | I | K | 2.61 | 1.000 |
| 5 | K | W | I | A | I | L | N | 0.46 | 1.000 |
| 6 | K | W | I | S | I | I | K | 0.08 | 1.000 |
| 7 | K | G | I | A | T | I | K | 0.08 | 1.000 |
| 8 | Q | W | I | A | I | I | K | 0.08 | 1.000 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR5T3.aApr07-unspliced | main_exon | CDS | chr11 | 56,252,200 | 56,253,219 | + |
| 3UTR | chr11 | 56,253,219 | 56,253,222 | + | ||