OR5W1P Olfactory Receptor
| Gene Symbol | OR5W1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | W |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-144, HsOR11.11.33P, ORL3540 |
| External Ids | HGNC: 15298 GeneBank: BK004814, NG_004188 ORDB: ORL3540 |
| Build #39 labels | OR5W1P |
| Chromosomal location | 11:55,903,344-55,904,146 (-) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5W2 | 61.78% | 259 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5W1 | 85% | 267 |
| Mouse | Or5w1 | 82% | 266 |
| Mouse | Or5w1b | 80% | 266 |
| Rat | Or5w1 | 84% | 262 |
| Cow | OR5W1 | 83% | 267 |
| Orang | OR5G1 | 52% | 266 |
| Horse | OR5W1 | 82% | 267 |
| Horse | OR5W1HP | 82% | 264 |
| Horse | OR5W1F | 80% | 267 |
| Horse | OR5W1G | 81% | 265 |
| Chimp | OR5W2 | 62% | 259 |
Sequence information
| Nucleotide sequence |
ATGATCCTACTGATCAAGATGGATCTCAGACTTCACACACCCGTGTATTATTTCCTGAGC AATTTGTCTTTCTGTGATGTCTGCTACTCTTCCACGTCTCTCCCAAATGCTAGCTGATTT CTTATCGGACCAAAAGTGGATTCCGTATAATTTATGTGCCATTCAGATGTATTTATTTGG AGTCTTTGCAGATGTGGAATGTCTCATGTTGGCTGTCATGGCCTATGATCGTTATGTTGC CATTTGCAATCCACTTCTTTATACGATCACTATGCCCAGGAGGATCTGCACCCAGCTAGT GGCTCTTGCCTATGTTGTAGGTTTGGTGGATTCTGCAATCCACACCTGCTGCACATTCAG ATTGTCATTCTGCAATTCTAATGTCATCAATCACTTTTTCTGTGACATCCCACCCTTGCT AGCCCTCAATCCTACTATTAATTGCTATTAATGAGATAGTGATGTTCACATTCGTTGGCT GTGTTGCGGGGTGCAGCATTGTCACTGTCTTCCTCTCCTACAGCTACATCATAATTACCA TCCTTAAAATGAGCTCAGCTGAGGGCAGACGGAAAGCCTTCTCTACCTGCACCTCCCACT TGATGGCCGTGGCTGTATTTCATGGCACACTCCTGTTCATGTATTTCCGACCCAGTTCAA GTTACTCAATGGAAACAGACAAAATGGCCTCTGTTTTCTACACAGTTGTCATACCTATGT TAAATCCACTGATCTACAGCTTAAGGAATAGGGATGTGAAAGGTGCTCTGAAAAAAGCAA TAAGCACTAAATTATATTCTGTA |
| Conceptual translation |
MILLIKMDLRLHTPVYYFLSNLSFCDVCYSS/VSP/MLADFLSDQKWIPYNLCAIQMY LFGVFADVECLMLAVMAYDRYVAICNPLLYTITMPRRICTQLVALAYVVGLVDSAIHTCC TFRLSFCNSNVINHFFCDIPPLLALNPTIN\INEIVMFTFVGCVAGCSIVTVFLSYSYI IITILKMSSAEGRRKAFSTCTSHLMAVAVFHGTLLFMYFRPSSSYSMETDKMASVFYTVV IPMLNPLIYSLRNRDVKGALKKAISTKLYSV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 55,671,259 | 55,671,259 | SNP | A/C | rs17595282 (DbSNP) | |
| 11 | 55,670,924 | 55,670,924 | SNP | A/G | rs73463646 (DbSNP) | |
| 11 | 55,671,121 | 55,671,121 | SNP | A/G | rs17510473 (DbSNP) | |
| 11 | 55,671,136 | 55,671,136 | SNP | A/G | rs61894869 (DbSNP) | |
| 11 | 55,671,037 | 55,671,037 | SNP | A/G | rs61894868 (DbSNP) | |
| 11 | 55,671,497 | 55,671,497 | SNP | A/G | rs17510521 (DbSNP) | |
| 11 | 55,671,293 | 55,671,293 | SNP | A/T | rs12271832 (DbSNP) | |
| 11 | 55,671,086 | 55,671,086 | SNP | C/T | rs11231508 (DbSNP) | |
| 11 | 55,903,561 | 55,903,561 | SNP | G/A | 1000GP (CEU) | |
| 11 | 55,903,610 | 55,903,610 | SNP | T/C | 1000GP (CEU) | |
| 11 | 55,903,645 | 55,903,645 | SNP | A/G | 1000GP (CEU) | |
| 11 | 55,903,660 | 55,903,660 | SNP | G/A | 1000GP (CEU) | |
| 11 | 55,903,783 | 55,903,783 | SNP | C/A | 1000GP (CEU) | |
| 11 | 55,904,021 | 55,904,021 | SNP | G/A | 1000GP (CEU) | |
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
| 11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
| CopyNumber | 202 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.