OR6C5P Olfactory Receptor
| Gene Symbol | OR6C5P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR12.5.10P |
| External Ids | HGNC: 31292 GeneBank: NG_004345 |
| Build #39 labels | |
| Chromosomal location | 12:55,311,835-55,312,757 (+) |
| Cluster | 12@56 |
| Synteny | CLIC#31 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR6C3 | 78.39% | 310 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6C3 | 80% | 310 |
| Mouse | Or6c5 | 83% | 312 |
| Mouse | Or6c5b | 83% | 312 |
| Mouse | Or6c5c | 81% | 312 |
| Rat | Or6c5c-ps | 80% | 312 |
| Cow | OR6C5 | 87% | 312 |
| Cow | OR6C5H | 86% | 312 |
| Orang | OR6C3 | 78% | 310 |
| Horse | OR6C5 | 84% | 312 |
| Horse | OR6C3OP | 83% | 312 |
| Chimp | OR6C1 | 68% | 309 |
Sequence information
| Nucleotide sequence |
ATGAGAAACCACACAACGATTACAGAGTTTGTACTCTTGGGCATATCAGACAGCCCAGAG CTTCAGATTGTAATTTTTATCTTTTTATTTATAACTTATGTATTAAGCATAACTGACAAT TTAACCATCATCATCCTTACCTTGACAGACTCTAGTCTAAAGACTCCTATGTATTACTTC CTCCGGAATTTCTCCTTTTCAGAAATTACATTCACCAGTGTTTCCATCCCCAAATTTTTG GGGGCAATTATTACTAAGGTCAAGACCATTTCCTATAACAACTGTTTAGCTCAATTATTT TTCTTCATCTTCATGGGTGCGTCTGAATTTTTTCTTCTAGCTGCAATGTCTTATGATCGT TATGTGGCCATCTGCAAGCCTCTCCACTACACCACCATCATGAACAAGAAAATTTGCACC CTGCTTGTCTTTAAGTTCATGGCTGGGAGGATTTCTGACCATTTTTCCACCACTCACGCT TATCCTCAAATTAGATTTTTGTGCTTCCAATGTCATTGATCACTTCTCCTGTGAGTATTT CCCCATTTTACAACTCTCATGCTCAGACATATGGCTTTTAGAGATTATTGGTTTTTACTT TGCCTTTGTTACTCTGCTGATCACCTTGGCATTAGTAATTCTGTCCTACGTATGCATCAT TTGCACTATTCTGAGAATCCCATGTGCCAGTCAGAGGAACTTACTCCTCTCATATGATCG TCATCTCCATCTCTTATGGAAGCTGCATATTCATGTATGTCAAGCCTTCAGCAAAAGAAA GAGCATCATTGACCAAAGGAGTAGCTATTCTGAACACTTCAATTGCCCCCATGCTGAACC CTTCTATTTACACCCTGAGAAACCAGCAAGTAAAACAAGCTTTTAAAGATTTGGCTCACA AAGTAGTGTTTTATAGAAACAAA |
| Conceptual translation |
MRNHTTITEFVLLGISDSPELQIVIFIFLFITYVLSITDNLTIIILTLTDSSLKTPMYYF LRNFSFSEITFTSVSIPKFLGAIITKVKTISYNNCLAQLFFFIFMGASEFFLLAAMSYDR YVAICKPLHYTTIMNKKICTLLVF\SWLGGFLTIFPPLTLILKLDFCASNVIDHFSCEY FPILQLSCSDIWLLEIIGFYFAFVTLLITLALVILSYVCIICTILRIPCASQR\YSSHM IVISISYGSCIFMYVKPSAKERASLTKGVAILNTSIAPMLNPSIYTLRNQQVKQAFKDLA HKVVFYRNK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 100 | -100 | SNP | C/T | 1000GP (YRI) | |
| 12 | 55,312,004 | 55,312,004 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 12 | 55,705,788 | 55,705,788 | SNP | C/T | rs61957871 (DbSNP) | |
| 12 | 55,705,833 | 55,705,833 | SNP | A/C | rs61957872 (DbSNP) | |
| 12 | 55,705,977 | 55,705,977 | SNP | G/T | rs61957873 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.