Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR6C5P Olfactory Receptor

Gene Symbol OR6C5P1 (View this gene in GeneCards)
Family 6
Subfamily C
Pseudogene Yes
CORP pseudogene probability score
Aliases HsOR12.5.10P
External Ids HGNC: 31292   GeneBank: NG_004345   
Build #39 labels
Chromosomal location 12:55,311,835-55,312,757 (+)
Cluster 12@56
Synteny CLIC#31
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR6C3 78.39% 310

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR6C3 80% 310
Mouse Or6c5 83% 312
Mouse Or6c5b 83% 312
Mouse Or6c5c 81% 312
Rat Or6c5c-ps 80% 312
Cow OR6C5 87% 312
Cow OR6C5H 86% 312
Orang OR6C3 78% 310
Horse OR6C5 84% 312
Horse OR6C3OP 83% 312
Chimp OR6C1 68% 309

Sequence information

Nucleotide sequence ATGAGAAACCACACAACGATTACAGAGTTTGTACTCTTGGGCATATCAGACAGCCCAGAG
CTTCAGATTGTAATTTTTATCTTTTTATTTATAACTTATGTATTAAGCATAACTGACAAT
TTAACCATCATCATCCTTACCTTGACAGACTCTAGTCTAAAGACTCCTATGTATTACTTC
CTCCGGAATTTCTCCTTTTCAGAAATTACATTCACCAGTGTTTCCATCCCCAAATTTTTG
GGGGCAATTATTACTAAGGTCAAGACCATTTCCTATAACAACTGTTTAGCTCAATTATTT
TTCTTCATCTTCATGGGTGCGTCTGAATTTTTTCTTCTAGCTGCAATGTCTTATGATCGT
TATGTGGCCATCTGCAAGCCTCTCCACTACACCACCATCATGAACAAGAAAATTTGCACC
CTGCTTGTCTTTAAGTTCATGGCTGGGAGGATTTCTGACCATTTTTCCACCACTCACGCT
TATCCTCAAATTAGATTTTTGTGCTTCCAATGTCATTGATCACTTCTCCTGTGAGTATTT
CCCCATTTTACAACTCTCATGCTCAGACATATGGCTTTTAGAGATTATTGGTTTTTACTT
TGCCTTTGTTACTCTGCTGATCACCTTGGCATTAGTAATTCTGTCCTACGTATGCATCAT
TTGCACTATTCTGAGAATCCCATGTGCCAGTCAGAGGAACTTACTCCTCTCATATGATCG
TCATCTCCATCTCTTATGGAAGCTGCATATTCATGTATGTCAAGCCTTCAGCAAAAGAAA
GAGCATCATTGACCAAAGGAGTAGCTATTCTGAACACTTCAATTGCCCCCATGCTGAACC
CTTCTATTTACACCCTGAGAAACCAGCAAGTAAAACAAGCTTTTAAAGATTTGGCTCACA
AAGTAGTGTTTTATAGAAACAAA
Conceptual translation MRNHTTITEFVLLGISDSPELQIVIFIFLFITYVLSITDNLTIIILTLTDSSLKTPMYYF
LRNFSFSEITFTSVSIPKFLGAIITKVKTISYNNCLAQLFFFIFMGASEFFLLAAMSYDR
YVAICKPLHYTTIMNKKICTLLVF\SWLGGFLTIFPPLTLILKLDFCASNVIDHFSCEY
FPILQLSCSDIWLLEIIGFYFAFVTLLITLALVILSYVCIICTILRIPCASQR\YSSHM
IVISISYGSCIFMYVKPSAKERASLTKGVAILNTSIAPMLNPSIYTLRNQQVKQAFKDLA
HKVVFYRNK

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
12 100 -100 SNP C/T 1000GP (YRI)
12 55,312,004 55,312,004 SNP T/C 1000GP (CEU, CHBJPT)
12 55,705,788 55,705,788 SNP C/T rs61957871 (DbSNP)
12 55,705,833 55,705,833 SNP A/C rs61957872 (DbSNP)
12 55,705,977 55,705,977 SNP G/T rs61957873 (DbSNP)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.