OR6C64P Olfactory Receptor
| Gene Symbol | OR6C64P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR12.5.22P |
| External Ids | HGNC: 31294 GeneBank: NG_004429 |
| Build #39 labels | |
| Chromosomal location | 12:55,522,593-55,523,471 (+) |
| Cluster | 12@56 |
| Synteny | CLIC#31 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR6C2 | 66.24% | 311 |
| OR6C68 | 63.36% | 292 |
| OR6C74 | 60.78% | 283 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6C38 | 81% | 312 |
| Dog | OR6C85 | 80% | 312 |
| Dog | OR6C94P | 81% | 274 |
| Mouse | Or6c38 | 80% | 312 |
| Rat | Or6c38 | 80% | 312 |
| Cow | OR6C288 | 81% | 312 |
| Orang | OR6C312P | 81% | 291 |
| Horse | OR6C322 | 79% | 312 |
| Chimp | OR6C68 | 65% | 284 |
Sequence information
| Nucleotide sequence |
ATGAAATATTATACAACAATAAAAACACTTATCCTGGTGGGACTAACAGATGACACAAAT CTACAGATTCTGCTTTTTATCTTCTTGTTTCTAACCTATTTGTTAAGTGTTGTTGGAAAT TTGACCATCATGACGTTCACTTTTGTGGACTCCCACCTTAAAACACCTATGTATTTTTTC CTCCGGAATTTTTCCATCTTGGAAGTCTCATTTACAACTGTGTGAATTCCCAGATTTCTC TACACAATGGCATCTGGGGAAAATACTGTTACCTATAATGCATGTGCCACTCAATTGTTT TTTGTTGTTGTCCTGGGTGTGACTGAGTTTTTTCTCCTAACAGCTATGTCCTATGATCGT TATGTAGCCATCTGCAAACCCCTGCATTACACGACCATCATGAACAACAGAGTTTGCATC AAGTTCCTCACTGGCTGTCATATAATTCCTCTAATCATTGTCATCCCACCATTTGGCATG GGCTTTGAGCTTGAATTTTGTGACTCCAATGTCATAGATCACTTTGACTGTGATGCTGCC CCCATCCTGAAGATTACCTGCTCTAACACAGAGTTTATAGAGCGATTTGTATTAGTCTTG GTGGTGTTGACACTCCTGTTTACCTTGGTGTGTGTGATTATGTCCTACACTTACATCATC AGGACCATTCTCAGATTCCCTTCTGCCCAGCAAAGGAAAAAGGCTTTTTGCACTTGCTCT TCCCATATAATTGTGGTTTCTATCACTTATGGAAGCTGCATCTTTATCTATGTTAAACCA TCTGCAAAAGAAGAGGTAGCTATTAACAAGGTGGTGTCAGTGCTGATACAGGCTTTCAAA GACATGATCAAAAGGATTGCATCTATCTCAAAAAACTAA |
| Conceptual translation |
MKYYTTIKTLILVGLTDDTNLQILLFIFLFLTYLLSVVGNLTIMTFTFVDSHLKTPMYFF LRNFSILEVSFTTVXPRFLYTMASGENTVTYNACATQLFFVVVLGVTEFFLLTAMSYDR YVAICKPLHYTTIMNNRVCIKFLTGCHIIPLIIVIPPFGMGFELEFCDSNVIDHFDCDAA PILKITCSNTEFIERFVLVLVVLTLLFTLVCVIMSYTYIIRTILRFPSAQQRKKAFCTCS SHIIVVSITYGSCIFIYVKPSAKEEVAINKVVSVLIQAFKDMIKRIASISKN Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 55,916,780 | 55,916,780 | SNP | A/G | rs12230513 (DbSNP) | |
| 12 | 55,916,383 | 55,916,383 | SNP | A/T | rs10783755 (DbSNP) | |
| 12 | 55,916,637 | 55,916,637 | SNP | C/A | rs4513498 (DbSNP) | |
| 12 | 55,916,717 | 55,916,717 | SNP | C/T | rs73324296 (DbSNP) | |
| 12 | 55,917,007 | 55,917,007 | SNP | G/T | rs55978845 (DbSNP) | |
| 12 | 55,916,900 | 55,916,900 | SNP | T/G | rs4301049 (DbSNP) | |
| 12 | 55,522,599 | 55,522,599 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 12 | 55,522,853 | 55,522,853 | SNP | A/C | 1000GP (CEU) | |
| 12 | 55,522,996 | 55,522,996 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 12 | 55,523,116 | 55,523,116 | SNP | T/G | 1000GP (CEU) | |
| 12 | 100 | -100 | SNP | T/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 12 | 55,832,210 | 56,001,052 | CopyNumber | Variation_4780 (DGV) |
| CopyNumber | 18 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.