OR6C66P Olfactory Receptor
| Gene Symbol | OR6C66P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR12.5.16 |
| External Ids | HGNC: 31296 GeneBank: NG_004430 |
| Build #39 labels | |
| Chromosomal location | 12:55,388,445-55,389,377 (+) |
| Cluster | 12@56 |
| Synteny | CLIC#31 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR6C65 | 76.62% | 308 |
| OR6C74 | 73.77% | 305 |
| OR6C76 | 77.42% | 310 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6C75C | 75% | 305 |
| Mouse | Or6c66 | 91% | 310 |
| Rat | Or6c66-ps | 85% | 310 |
| Rat | Or6c66b | 85% | 310 |
| Rat | Or6c66f-ps | 84% | 310 |
| Cow | OR6C76 | 76% | 310 |
| Orang | OR6C66 | 96% | 307 |
| Horse | OR6C66 | 91% | 310 |
| Horse | OR6C66H | 90% | 310 |
| Chimp | OR6C74 | 73% | 305 |
Sequence information
| Nucleotide sequence |
ATGAAAAATTATGCTTCTGTGAAACAGTTCATTCTTCTGGGATTAACAGATGACCCAAAG CTAAATGTTTTGATTTTTATATTTCTATTTTTTACATATATACTGAGTATAACTGGGAAC CTGACAATTATTACTCTCACTTTGATAGATGTGCACCTCAAAACACCCATGTACTTTTTC CTTAGGAATTTCTCTTTTCTAGAAATCTCATTCACAACAGTTTGTATTCCTAGGTTTCTG GTCAGCATCGTAACAGGGGATAAGACCATTTCTTATAATTCTTGCATGGCCCAGGTATTT TTCTTTATACTCCTTGGTTCAACAGAATTTTTCCTTTTGACTGCTATGTCCTATGATTGT TATGTTGCTATCTGTAAGCCACTGCACTACACAACAATAATGAACAGCAGAGTCTGCATC CAGCTTGTAATTAGCTCTTGGCTAGCTGGATTTCTCATTATCTTTCCACCTGTAATTATG GGGCTTCAACTGGATTTCTGTGACTCCAACATCATTGATCACTTTACCTGTGATTCCTCT CCTATGCTACTGATCTCCTGCACAGACACAGCGTTTCTAGAGTTCATGGGATTTTTCCTG GCCATATTCACTCTCATGGTAACCTTAACATTAGTGATTCTTTCCTATGTATTCATCCTT AAGACAATCCTGAGAATTCCTTCTGCTGAACAAAGGAAAAAGGCCTTTTCCACTTGTTCT TCACACATGATTGTTGTCTCCATTTCTTATGGAAGCTGCATTTTCATGTATGTCAAAACA TCAGCAAAAGAAGGAGTGGCTTTGACCAAGGGTATAGCAGTGCTCAATACCTCTGTAGCC CCAGTGTTAAATCCTTTTACTTACTCCCTAAGGAACCAGTAGGTAAAACAGTCTTTTCAG AACTTGATCAAAAAATGTTTTTCAAATAAATTT |
| Conceptual translation |
MKNYASVKQFILLGLTDDPKLNVLIFIFLFFTYILSITGNLTIITLTLIDVHLKTPMYFF LRNFSFLEISFTTVCIPRFLVSIVTGDKTISYNSCMAQVFFFILLGSTEFFLLTAMSYDC YVAICKPLHYTTIMNSRVCIQLVISSWLAGFLIIFPPVIMGLQLDFCDSNIIDHFTCDSS PMLLISCTDTAFLEFMGFFLAIFTLMVTLTLVILSYVFILKTILRIPSAEQRKKAFSTCS SHMIVVSISYGSCIFMYVKTSAKEGVALTKGIAVLNTSVAPVLNPFTYSLRNQXKQSFQ NLIKKCFSNKF Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI) | |
| 12 | 55,388,906 | 55,388,906 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 12 | 55,389,017 | 55,389,017 | SNP | G/T | 1000GP (CEU) | |
| 12 | 55,389,030 | 55,389,030 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 12 | 55,389,035 | 55,389,035 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 12 | 55,389,052 | 55,389,052 | SNP | T/C | 1000GP (CHBJPT) | |
| 12 | 55,782,288 | 55,782,287 | Ins(1) | -/A | rs35978556 (DbSNP) | |
| 12 | 55,782,690 | 55,782,690 | SNP | C/T | rs7487315 (DbSNP) | |
| 12 | 55,782,814 | 55,782,814 | SNP | A/G | rs7487832 (DbSNP) | |
| 12 | 55,782,819 | 55,782,819 | SNP | A/C | rs7487833 (DbSNP) | |
| 12 | 55,782,824 | 55,782,824 | Del(1) | -/T | rs35774302 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 12 | 55,780,615 | 55,784,310 | CopyNumber | Variation_66230 (DGV) |
| 12 | 55,782,129 | 55,785,161 | CopyNumber | #127 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.