Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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Chromosome:

OR6C66P Olfactory Receptor

Gene Symbol OR6C66P1 (View this gene in GeneCards)
Family 6
Subfamily C
Pseudogene Yes
CORP pseudogene probability score
Aliases HsOR12.5.16
External Ids HGNC: 31296   GeneBank: NG_004430   
Build #39 labels
Chromosomal location 12:55,388,445-55,389,377 (+)
Cluster 12@56
Synteny CLIC#31
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR6C65 76.62% 308
OR6C74 73.77% 305
OR6C76 77.42% 310

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR6C75C 75% 305
Mouse Or6c66 91% 310
Rat Or6c66-ps 85% 310
Rat Or6c66b 85% 310
Rat Or6c66f-ps 84% 310
Cow OR6C76 76% 310
Orang OR6C66 96% 307
Horse OR6C66 91% 310
Horse OR6C66H 90% 310
Chimp OR6C74 73% 305

Sequence information

Nucleotide sequence ATGAAAAATTATGCTTCTGTGAAACAGTTCATTCTTCTGGGATTAACAGATGACCCAAAG
CTAAATGTTTTGATTTTTATATTTCTATTTTTTACATATATACTGAGTATAACTGGGAAC
CTGACAATTATTACTCTCACTTTGATAGATGTGCACCTCAAAACACCCATGTACTTTTTC
CTTAGGAATTTCTCTTTTCTAGAAATCTCATTCACAACAGTTTGTATTCCTAGGTTTCTG
GTCAGCATCGTAACAGGGGATAAGACCATTTCTTATAATTCTTGCATGGCCCAGGTATTT
TTCTTTATACTCCTTGGTTCAACAGAATTTTTCCTTTTGACTGCTATGTCCTATGATTGT
TATGTTGCTATCTGTAAGCCACTGCACTACACAACAATAATGAACAGCAGAGTCTGCATC
CAGCTTGTAATTAGCTCTTGGCTAGCTGGATTTCTCATTATCTTTCCACCTGTAATTATG
GGGCTTCAACTGGATTTCTGTGACTCCAACATCATTGATCACTTTACCTGTGATTCCTCT
CCTATGCTACTGATCTCCTGCACAGACACAGCGTTTCTAGAGTTCATGGGATTTTTCCTG
GCCATATTCACTCTCATGGTAACCTTAACATTAGTGATTCTTTCCTATGTATTCATCCTT
AAGACAATCCTGAGAATTCCTTCTGCTGAACAAAGGAAAAAGGCCTTTTCCACTTGTTCT
TCACACATGATTGTTGTCTCCATTTCTTATGGAAGCTGCATTTTCATGTATGTCAAAACA
TCAGCAAAAGAAGGAGTGGCTTTGACCAAGGGTATAGCAGTGCTCAATACCTCTGTAGCC
CCAGTGTTAAATCCTTTTACTTACTCCCTAAGGAACCAGTAGGTAAAACAGTCTTTTCAG
AACTTGATCAAAAAATGTTTTTCAAATAAATTT
Conceptual translation MKNYASVKQFILLGLTDDPKLNVLIFIFLFFTYILSITGNLTIITLTLIDVHLKTPMYFF
LRNFSFLEISFTTVCIPRFLVSIVTGDKTISYNSCMAQVFFFILLGSTEFFLLTAMSYDC
YVAICKPLHYTTIMNSRVCIQLVISSWLAGFLIIFPPVIMGLQLDFCDSNIIDHFTCDSS
PMLLISCTDTAFLEFMGFFLAIFTLMVTLTLVILSYVFILKTILRIPSAEQRKKAFSTCS
SHMIVVSISYGSCIFMYVKTSAKEGVALTKGIAVLNTSVAPVLNPFTYSLRNQXKQSFQ
NLIKKCFSNKF

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
12 100 -100 SNP C/T 1000GP (YRI, YRI, YRI, YRI)
12 55,388,906 55,388,906 SNP C/T 1000GP (CEU, CHBJPT)
12 55,389,017 55,389,017 SNP G/T 1000GP (CEU)
12 55,389,030 55,389,030 SNP A/G 1000GP (CEU, CHBJPT)
12 55,389,035 55,389,035 SNP A/C 1000GP (CEU, CHBJPT)
12 55,389,052 55,389,052 SNP T/C 1000GP (CHBJPT)
12 55,782,288 55,782,287 Ins(1) -/A rs35978556 (DbSNP)
12 55,782,690 55,782,690 SNP C/T rs7487315 (DbSNP)
12 55,782,814 55,782,814 SNP A/G rs7487832 (DbSNP)
12 55,782,819 55,782,819 SNP A/C rs7487833 (DbSNP)
12 55,782,824 55,782,824 Del(1) -/T rs35774302 (DbSNP)

Variations - CNVs

Chr Start End Type Sources
12 55,780,615 55,784,310 CopyNumber Variation_66230 (DGV)
12 55,782,129 55,785,161 CopyNumber #127 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.