OR6C71P Olfactory Receptor
| Gene Symbol | OR6C71P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR12.5.15P |
| External Ids | HGNC: 31300 GeneBank: NG_004347 |
| Build #39 labels | |
| Chromosomal location | 12:55,376,801-55,377,736 (-) |
| Cluster | 12@56 |
| Synteny | CLIC#31 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR6C74 | 67.31% | 312 |
| OR6C75 | 67.31% | 312 |
| OR6C76 | 69.18% | 305 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6C74 | 69% | 305 |
| Mouse | Or6c74 | 69% | 308 |
| Rat | Or6c74 | 68% | 312 |
| Cow | OR6C76 | 69% | 305 |
| Orang | OR6C74 | 68% | 305 |
| Horse | OR6C71 | 82% | 305 |
| Chimp | OR6C74 | 69% | 305 |
Sequence information
| Nucleotide sequence |
ATGAGAAACCATACAATGGTGACAACCTTCATTCTTCTAGGACTGACAGGTGATTTACAC TGGCAAACTGTAATTTTCCTTTTTCTATTTTTAACGTATTTATTGAGTGTCATTGGAAAT CTAATCATTATCCTGCTCACCTTGCTGGATTCTCACCTCAAAACACCCATGTATTTCTTC CTTCGGAATTTTTCTGTTTTAGAAATCTTGTTGACATCTGTCTGCATCCCTAGATTCCTA GTAAGCAAAGTGACTATGGATAAAACTATTTCCTATGATGCTTGTGTGACACAATTATTT TTTGTCATTTTTTTTGGGTGTATCAGAGTTTTTTCTGCTGGCTGCCATGTCCTATGACCG TTATGTGGCCATCTGCAAACCCCTGCATTATGCATTCATTATGAGCAACAGAGTCTGCAA CCAGATGGCTGTTGCCTCTTGGTGGGCTGGTTTGTTAATGATCTTTCCTAGACTTACATG GGCCTGAGATTGGAATTCTGTGATGCCAATATTATTGACCACTTTTTCTGTGACTATTCT CCTGTTCTGAAACTCTCCTGCACAGACACACAGGTCATAGAAATGTTAAGCTTTATTTTA GCCACTGTCACACTCCTGATTACATTGGTCCTGGTAATGTACTCCTACGCAAATATCATA AAATCTATTCTGAAGGTTTCTTCTGCGCAGCAGAGGAAGAAGGCCTTTTCTACCTGTTCC TCCCATATGATTGTTGTTTCCATCTCTTACGGCAGCTGTATTTTCATGTATATTAAATCT TCTGCAGAAGAAGGGGTAGCTTTAAACAAGGGAGTAGCAATACTCAGCACTTCAGTTGCA CCTGTATTAAATTCTTTTATATATACCTTAAGAAATAAGCAAGTGAAACAAGCCCTGAAG AATATAGTAAAAAAGTATATCTTTACTACTTTGAAA |
| Conceptual translation |
MRNHTMVTTFILLGLTGDLHWQTVIFLFLFLTYLLSVIGNLIIILLTLLDSHLKTPMYFF LRNFSVLEILLTSVCIPRFLVSKVTMDKTISYDACVTQLF\SFFLGVSEFFLLAAMSYD RYVAICKPLHYAFIMSNRVCNQMAVASWWAGLLMI/SXYMGLRLEFCDANIIDHFFCD YSPVLKLSCTDTQVIEMLSFILATVTLLITLVLVMYSYANIIKSILKVSSAQQRKKAFST CSSHMIVVSISYGSCIFMYIKSSAEEGVALNKGVAILSTSVAPVLNSFIYTLRNKQVKQA LKNIVKKYIFTTLK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 12 | 55,376,987 | 55,376,987 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 12 | 55,377,125 | 55,377,125 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 12 | 55,377,134 | 55,377,134 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 12 | 55,377,278 | 55,377,278 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 12 | 55,377,341 | 55,377,341 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 12 | 55,377,342 | 55,377,342 | SNP | A/T | 1000GP (CEU) | |
| 12 | 55,770,771 | 55,770,771 | SNP | A/G | rs7488140 (DbSNP) | |
| 12 | 55,770,909 | 55,770,909 | SNP | C/T | rs7485722 (DbSNP) | |
| 12 | 55,770,918 | 55,770,918 | SNP | G/T | rs7488178 (DbSNP) | |
| 12 | 55,771,061 | 55,771,061 | SNP | C/T | rs74090688 (DbSNP) | |
| 12 | 55,771,062 | 55,771,062 | SNP | A/G | rs7488143 (DbSNP) | |
| 12 | 55,771,125 | 55,771,125 | SNP | A/G | rs7488163 (DbSNP) | |
| 12 | 55,771,125 | 55,771,126 | mnp | AA/GT | rs71453846 (DbSNP) | |
| 12 | 55,771,126 | 55,771,126 | SNP | A/T | rs7488164 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.