OR6C73P Olfactory Receptor
| Gene Symbol | OR6C73P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | |
| External Ids | HGNC: 31302 GeneBank: NG_004433 |
| Build #39 labels | |
| Chromosomal location | 12:55,396,276-55,397,273 (+) |
| Cluster | 12@56 |
| Synteny | CLIC#31 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR6C75 | 71.03% | 145 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6C75 | 69% | 123 |
| Mouse | Or6c75 | 71% | 128 |
| Rat | Or6c75-ps | 69% | 130 |
| Cow | OR6C75 | 76% | 123 |
| Orang | OR6C91P | 79% | 117 |
| Horse | OR6C75 | 77% | 123 |
| Chimp | OR6C68 | 62% | 127 |
Sequence information
| Nucleotide sequence |
TTATTTCTTCATTTATTTTATAGCTAAAATAAAGAGTAACATAATAAAGAAAGAAAGAAA TAAGTAATAAGAAATTGCAAGGCAGTAATAGAATTTATTCTTCTTGGATTGACAAGTGAC CCACAGTGGCAGGTTGTGCTTTTCATATTTCTTGCTACCTACATGCTAAGTGGGACTGGG AATCTGATCTTTATCACTCTCTCACCCTTTCAGATCCCCATCTGCAGACTCCCATGCATT TCTTCCTTCAGAACTTCTCATTTCTGGAAATATCATTCATGTCTGTCTGCATTCCCAGAT TCCTTGTCACCATCGTGACTGGAGACATAACCATTTCTATAATGGTTGTGTGTCTCAGCT ATTTTTTTCATCTTGGGGGTGACCAAATTTTACCTTCTGGCTGCTATGTCCTTTGACTGC TACATGATTCTAAAGAGTTTTCTATAAATGAAGAGATAAATTATTTATATGTTAGTTTTC CTTTATTGCCAAACCTGTGATACTGCCTTCATCTTTTCATTGTCTCTTTCACAGTTTCAA CATCTTCCCCAACCCAAGCAAATGACTTTTGGAGGCCTTTGAGAACTGCCAAAAAACGAG TTCAGGCTTATTATCTTTAGTTATTGAGTCCCTCAAAATCAATGTGTCATTAATAAAATT AATTATCAGGACTCAGTAGCTGTGACTCTGACTAGGTATAAGGTATTTGGATTTGATATT GGCACCTTGATTTTCAGCCTGATCTGATTATCTTGATTAATGTAAATGACTGTAGAAAAT CTAATTCCCTGGCAAATAGTTTTCATTATTGTTCAAAGAAGAGGCTGTCTTTAACAATCA CGTACTTCTTACCATTGTGTTTTCATGGAATGACTCACATGTTTTTTCAAATTCTAACAT AATACCAACAGAAAACTAAAATTATGATTACTTTGTTTACAAGTTCCTTATTATAACACA CAATTTACAAAGAAAATGAAACAATGCAAGTCTTTTTG |
| Conceptual translation |
LFLHLFYSXKEXNKERKKXIRNCKAVIEFILLGLTSDPQWQVVLFIFLATYMLSGTG NLIFI/SLTLSDPHLQTPMHFFLQNFSFLEISFMSVCIPRFLVTIVTGDITISI/GCV SQLF/FILGVTKFYLLAAMSFDCYMILKSFLXKRXIYMLVFLYCQTC/YCLHLFIV SFTVSTSSPTQANDFWRPLRTAKKRVQAYYLXLSPSKSMCHXNXSGLSSCDSDXX IWIXWHLDFQPDLIILINVNDCRKSNSLANSFHYCSKKRLSLTITYFLPLCFHGMTHMF FQILTXQQKTKIMITLFTSSLLXTIYKENETMQVFL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 100 | -100 | SNP | A/T | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
| 12 | 55,396,333 | 55,396,333 | SNP | A/T | 1000GP (CEU, CHBJPT) | |
| 12 | 55,396,966 | 55,396,966 | SNP | A/T | 1000GP (CEU, CHBJPT) | |
| 12 | 55,397,161 | 55,397,161 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 12 | 55,397,192 | 55,397,192 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 12 | 55,790,117 | 55,790,117 | SNP | A/T | rs6581039 (DbSNP) | |
| 12 | 55,790,750 | 55,790,750 | SNP | A/T | rs7954814 (DbSNP) | |
| 12 | 55,790,945 | 55,790,945 | SNP | C/T | rs6581040 (DbSNP) | |
| 12 | 55,790,976 | 55,790,976 | SNP | A/T | rs6581041 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 12 | 55,789,960 | 55,793,057 | CopyNumber | #89 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.