OR6C7P Olfactory Receptor
| Gene Symbol | OR6C7P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR12.5.13P |
| External Ids | HGNC: 31306 GeneBank: NG_004346 |
| Build #39 labels | |
| Chromosomal location | 12:55,342,838-55,343,776 (+) |
| Cluster | 12@56 |
| Synteny | CLIC#31 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR6C3 | 80.39% | 311 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6C7 | 93% | 313 |
| Dog | OR6C7DP | 90% | 313 |
| Mouse | Or6c7 | 89% | 313 |
| Rat | Or6c7 | 89% | 313 |
| Cow | OR6C7G | 89% | 313 |
| Cow | OR6C7 | 87% | 313 |
| Cow | OR6C7E | 86% | 313 |
| Orang | OR6C3 | 79% | 311 |
| Horse | OR6C7 | 90% | 313 |
| Horse | OR6C7K | 89% | 313 |
| Chimp | OR6C1 | 69% | 312 |
Sequence information
| Nucleotide sequence |
ATGAAAAACTACACAGTACTCACAGAATTCATTCTTCTAGGGCTATCAGATGACCCAGAA TTTCAGATTGTGATTTTTCTCTTTTTAATTATCATGTACATATTAAGTGTCACTGGAAAT TTGACCATCATCACTCTCACCTTGGTGGACTCCCATCTGCAGACCCCCATGTACTTCTTC CTCAGGAACTTTTCTGTATTAGAAATAACCTTTACAACTCTCTGTTTCCCTATATTTCTG GCCACCATTATCACCAGACACAAAACTATTTCATACAATAGTTGTACAGCTCAGTTGTTT TTCTTCATCTTTATGGGTATAACTGAATTTTACCTTCTAACAGCCAAGTCCTATGATCGT TATGTGGCCATCTGTAAACCCCTTCATTATATGACCATCATGAACAAGAGAGTCTGCATA TTGCTTGTCTTTTGTGCTTGGTTGGCAGGTTCTTAAATATCTTCCCCCCAGTTATTCTTT TTCTCCGGTTAGATTACTGTGGCTCCAATGTCATTGATCACTTTGCTTGTGACTATTTCT CCCTATTGCAATTATCCTGCATAGGGAGGCACATGGCTCCTAGAAGTGATTGGTTTTTAC TCTGCAATAGTAATTCTGCTTTTCACTTTGGCATTAATCATTCTATCCTACATGTTTATC ATTAGGACAATTTTGAAACTCCCCTCTGCTAGTCAGCGAAAAAAGGCATTTTCTACGTGT TCCTCTCACATGATTGTCATTTCCATTTCCTATGGAAGCTGCATATTCATGTACGCTAAT CACTCTGCAAAAGAAAGAGCGTCGTTGACCAAAGGAGTAGCTATTCTCAATACCTCCGTT GCTCCTATGATGAATCCATTTATATACACCCTGAGGAACCAGCAAGTGAAGCAAGCCTTT AAGGACACCATCCAAAAGGTTATGTTTTTCTCTGGTAAA |
| Conceptual translation |
MKNYTVLTEFILLGLSDDPEFQIVIFLFLIIMYILSVTGNLTIITLTLVDSHLQTPMYFF LRNFSVLEITFTTLCFPIFLATIITRHKTISYNSCTAQLFFFIFMGITEFYLLTAKSYDR YVAICKPLHYMTIMNKRVCILLVFCAWLAG/LNIFPPVILFLRLDYCGSNVIDHFACDY FSLLQLSCIG\TWLLEVIGFYSAIVILLFTLALIILSYMFIIRTILKLPSASQRKKAFS TCSSHMIVISISYGSCIFMYANHSAKERASLTKGVAILNTSVAPMMNPFIYTLRNQQVKQ AFKDTIQKVMFFSGK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 12 | 55,342,875 | 55,342,875 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 12 | 55,342,878 | 55,342,878 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 12 | 55,343,057 | 55,343,057 | SNP | C/G | 1000GP (CEU) | |
| 12 | 55,343,079 | 55,343,079 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 12 | 55,343,314 | 55,343,314 | SNP | C/A | 1000GP (CHBJPT) | |
| 12 | 55,343,534 | 55,343,534 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 12 | 55,343,552 | 55,343,552 | SNP | A/G | 1000GP (CHBJPT) | |
| 12 | 55,343,619 | 55,343,619 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 12 | 55,736,659 | 55,736,659 | SNP | C/T | rs73118998 (DbSNP) | |
| 12 | 55,736,662 | 55,736,662 | SNP | A/G | rs73119000 (DbSNP) | |
| 12 | 55,736,841 | 55,736,841 | SNP | C/G | rs10747741 (DbSNP) | |
| 12 | 55,736,863 | 55,736,863 | SNP | C/T | rs7313465 (DbSNP) | |
| 12 | 55,736,969 | 55,736,976 | Del(8) | -/GTCCTATG | rs11278460 (DbSNP) | |
| 12 | 55,737,098 | 55,737,098 | SNP | A/C | rs57632086 (DbSNP) | |
| 12 | 55,737,164 | 55,737,164 | SNP | C/T | rs60173470 (DbSNP) | |
| 12 | 55,737,318 | 55,737,318 | SNP | C/T | rs10783722 (DbSNP) | |
| 12 | 55,737,403 | 55,737,403 | SNP | A/C | rs7314118 (DbSNP) | |
| 12 | 55,737,459 | 55,737,459 | SNP | C/G | rs59019100 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 107 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.