Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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Chromosome:

OR6C7P Olfactory Receptor

Gene Symbol OR6C7P1 (View this gene in GeneCards)
Family 6
Subfamily C
Pseudogene Yes
CORP pseudogene probability score
Aliases HsOR12.5.13P
External Ids HGNC: 31306   GeneBank: NG_004346   
Build #39 labels
Chromosomal location 12:55,342,838-55,343,776 (+)
Cluster 12@56
Synteny CLIC#31
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR6C3 80.39% 311

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR6C7 93% 313
Dog OR6C7DP 90% 313
Mouse Or6c7 89% 313
Rat Or6c7 89% 313
Cow OR6C7G 89% 313
Cow OR6C7 87% 313
Cow OR6C7E 86% 313
Orang OR6C3 79% 311
Horse OR6C7 90% 313
Horse OR6C7K 89% 313
Chimp OR6C1 69% 312

Sequence information

Nucleotide sequence ATGAAAAACTACACAGTACTCACAGAATTCATTCTTCTAGGGCTATCAGATGACCCAGAA
TTTCAGATTGTGATTTTTCTCTTTTTAATTATCATGTACATATTAAGTGTCACTGGAAAT
TTGACCATCATCACTCTCACCTTGGTGGACTCCCATCTGCAGACCCCCATGTACTTCTTC
CTCAGGAACTTTTCTGTATTAGAAATAACCTTTACAACTCTCTGTTTCCCTATATTTCTG
GCCACCATTATCACCAGACACAAAACTATTTCATACAATAGTTGTACAGCTCAGTTGTTT
TTCTTCATCTTTATGGGTATAACTGAATTTTACCTTCTAACAGCCAAGTCCTATGATCGT
TATGTGGCCATCTGTAAACCCCTTCATTATATGACCATCATGAACAAGAGAGTCTGCATA
TTGCTTGTCTTTTGTGCTTGGTTGGCAGGTTCTTAAATATCTTCCCCCCAGTTATTCTTT
TTCTCCGGTTAGATTACTGTGGCTCCAATGTCATTGATCACTTTGCTTGTGACTATTTCT
CCCTATTGCAATTATCCTGCATAGGGAGGCACATGGCTCCTAGAAGTGATTGGTTTTTAC
TCTGCAATAGTAATTCTGCTTTTCACTTTGGCATTAATCATTCTATCCTACATGTTTATC
ATTAGGACAATTTTGAAACTCCCCTCTGCTAGTCAGCGAAAAAAGGCATTTTCTACGTGT
TCCTCTCACATGATTGTCATTTCCATTTCCTATGGAAGCTGCATATTCATGTACGCTAAT
CACTCTGCAAAAGAAAGAGCGTCGTTGACCAAAGGAGTAGCTATTCTCAATACCTCCGTT
GCTCCTATGATGAATCCATTTATATACACCCTGAGGAACCAGCAAGTGAAGCAAGCCTTT
AAGGACACCATCCAAAAGGTTATGTTTTTCTCTGGTAAA
Conceptual translation MKNYTVLTEFILLGLSDDPEFQIVIFLFLIIMYILSVTGNLTIITLTLVDSHLQTPMYFF
LRNFSVLEITFTTLCFPIFLATIITRHKTISYNSCTAQLFFFIFMGITEFYLLTAKSYDR
YVAICKPLHYMTIMNKRVCILLVFCAWLAG/LNIFPPVILFLRLDYCGSNVIDHFACDY
FSLLQLSCIG\TWLLEVIGFYSAIVILLFTLALIILSYMFIIRTILKLPSASQRKKAFS
TCSSHMIVISISYGSCIFMYANHSAKERASLTKGVAILNTSVAPMMNPFIYTLRNQQVKQ
AFKDTIQKVMFFSGK

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
12 100 -100 SNP T/C 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI)
12 55,342,875 55,342,875 SNP T/C 1000GP (CEU, CHBJPT)
12 55,342,878 55,342,878 SNP G/A 1000GP (CEU, CHBJPT)
12 55,343,057 55,343,057 SNP C/G 1000GP (CEU)
12 55,343,079 55,343,079 SNP C/T 1000GP (CEU, CHBJPT)
12 55,343,314 55,343,314 SNP C/A 1000GP (CHBJPT)
12 55,343,534 55,343,534 SNP C/T 1000GP (CEU, CHBJPT)
12 55,343,552 55,343,552 SNP A/G 1000GP (CHBJPT)
12 55,343,619 55,343,619 SNP A/C 1000GP (CEU, CHBJPT)
12 55,736,659 55,736,659 SNP C/T rs73118998 (DbSNP)
12 55,736,662 55,736,662 SNP A/G rs73119000 (DbSNP)
12 55,736,841 55,736,841 SNP C/G rs10747741 (DbSNP)
12 55,736,863 55,736,863 SNP C/T rs7313465 (DbSNP)
12 55,736,969 55,736,976 Del(8) -/GTCCTATG rs11278460 (DbSNP)
12 55,737,098 55,737,098 SNP A/C rs57632086 (DbSNP)
12 55,737,164 55,737,164 SNP C/T rs60173470 (DbSNP)
12 55,737,318 55,737,318 SNP C/T rs10783722 (DbSNP)
12 55,737,403 55,737,403 SNP A/C rs7314118 (DbSNP)
12 55,737,459 55,737,459 SNP C/G rs59019100 (DbSNP)

Variations - CNVs

Chr Start End Type Sources
CopyNumber 107 (Hasin)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.