OR6D1P Olfactory Receptor
| Gene Symbol | OR6D1P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | D |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR10.2.1P, ORL3266 |
| External Ids | HGNC: 14849 GeneBank: AF399475, NG_004293 ORDB: ORL3266 |
| Build #39 labels | OR6D1P |
| Chromosomal location | 10:45,258,308-45,259,120 (+) |
| Cluster | 10@46 |
| Synteny | CLIC#22 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR6C74 | 47.21% | 269 |
| OR6C75 | 47.94% | 267 |
| OR6T1 | 47.71% | 262 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6D7 | 78% | 270 |
| Mouse | Or6d12 | 72% | 271 |
| Rat | Or6d13 | 72% | 271 |
| Cow | OR6D18 | 75% | 271 |
| Orang | OR6D1B | 92% | 271 |
| Orang | OR6D1 | 92% | 271 |
| Horse | OR6D23 | 74% | 270 |
| Chimp | OR6D1 | 93% | 271 |
Sequence information
| Nucleotide sequence |
ATGGCAAACATGCTCATAATCACCATCACCTGGGCTGACCATCACCTCCAGACACCTATG TATTTCTTCCTCAGCAGTTTTTCCTTCTGTGAATGCTGTTTTATCACCACAGTTATTCCT AAACTTCTGGTCATCTTTCTTTCAGGCAGGCAAATAATCCCCTTTACTACTTGTCTCATG CAGTCCTTTTCATTTTTATTTCTTGGGTCAACAGTTTTCTTCCTTATGGCTGTGATGTCC TTGGATTGATACCTGGCCATTTGCAAGCCTCTGCATTACTCCACCATCATGAGCCTGAGG ACTAGCTTCCACCTGGTCACTGCCTGCTTTGTCGTGGGCTTCACTCTCATCACTGGTCTC ATGGTGAAGGTTTCCCAGTTATCTTTCTGTGGACCCCATGTCATCCCTCACTTCTTCCGT GACCTCGGCCCTCTGATCCAACTCTCCTGTTCTGACACCAGATCTACTGAAACGTTGGCC TTTGTCCTTGTTTCATTCGTTCTTTTTACATCCCTCATTATAACCATCATTGCATATGGC AACATAGTAGTCACAATTGTACGACTCCCATCAGCCAAGGAGCGGCAGAAAGCTTTCTCC ACCTGCTCCTCTCACCTCATTGTCCTCTCTCTGGTGTATGGCAGCTGTGTCTTCATATAT GTGAAGCCGAAGCAAATGGACAGGCTGGACTCCAACAGAAAGGCTGCTCTTGTGAACACA GTGGTGACCCCACTGCTGAACCCGATCATTTACACTCTGCGGAACAAGCAGGTCCACCAG GCTCTGAGGGATGCTCAGTCCAGAATGAAATTG |
| Conceptual translation |
MANMLIITITWADHHLQTPMYFFLSSFSFCECWFITTVIPKLLVIFLSGRQIIPFTTCLM QSFSFLFLGSTVFFLMAVMSLDXLAICKPLHYSTIMSLRTSFHLVTACFVVGFTLITGL MVKVSQLSFCGPHVIPHFFRDLGPLIQLSCSDTRSTETLAFVLVSFVLFTSLIITIIAYG NIVVTIVRLPSAKERQKAFSTCSSHLIVLSLVYGSCVFIYVKPKQMDRLDSNRKAALVNT VVTPLLNPIIYTLRNKQVHQALRDAQSRMKL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 10 | 100 | -100 | SNP | C/T | 1000GP (YRI) | |
| 10 | 45,258,725 | 45,258,725 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 10 | 45,258,781 | 45,258,781 | SNP | G/A | 1000GP (CHBJPT) | |
| 10 | 45,258,802 | 45,258,802 | SNP | A/T | 1000GP (CEU) | |
| 10 | 45,258,969 | 45,258,969 | SNP | T/C | 1000GP (CHBJPT) | |
| 10 | 45,258,973 | 45,258,973 | SNP | G/A | 1000GP (CEU) | |
| 10 | 45,753,862 | 45,753,861 | Ins(1) | -/C | rs35818275 (DbSNP) | |
| 10 | 45,754,173 | 45,754,173 | SNP | C/T | rs1890739 (DbSNP) | |
| 10 | 45,754,449 | 45,754,448 | Ins(1) | -/A | rs34456142 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 81 (Hasin) | |||
| 10 | 45,550,145 | 45,820,136 | CopyNumber | Variation_9148 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.