OR6K1P Olfactory Receptor
| Gene Symbol | OR6K1P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | K |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR1-7, HsOR1.4.11P, ORL3063 |
| External Ids | HGNC: 15028 GeneBank: BK004765, NG_004271 ORDB: ORL3063 |
| Build #39 labels | OR6K1P |
| Chromosomal location | 1:158,694,539-158,695,509 (-) |
| Cluster | 1@159a |
| Synteny | CLIC#4 |
| Remarks | Disrupted by Alu repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR6K2 | 60.41% | 293 |
| OR6K4P | 60.5% | 281 |
| OR6K6 | 61.65% | 279 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6K2 | 64% | 291 |
| Mouse | Or6k2 | 65% | 285 |
| Rat | Or6k2 | 65% | 285 |
| Cow | OR6K2 | 64% | 285 |
| Orang | OR6K2 | 63% | 285 |
| Horse | OR6K2 | 63% | 294 |
| Chimp | OR6K2 | 63% | 285 |
Sequence information
| Nucleotide sequence |
TCCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGCATGA GCCACCGCGCCCAGCTGGCTTTTGTTTTTTATCCTTCTGCTCCTCATTTACCTATTCACC ATCATTGGTAGTCTTATGGTGTTCTTTGCCATCAAACTGGATTTCTGCCTGCACAGCTCC TTGTATTTCTTCATCAGTGTCCTCTCCTTCCTAGAGATCTGGTATACCACCATCACCATC CCCAAGATGTTCTTCAACCTAGCCAGTGAGCAGAAGACCACCTCCCTGGATGGTTGCCTA TTGCAGATGTATTTCTTTTACTCCCTCGGCATCACTGAGGTTTGCTTGCTCACCACCAGG GCTATGGACAGATACCTGGCCATCTGTAATCACCTTTGCTACCCCACAGTCACGACACCT TAGCTCTACACTCAGGTGATTCTAGGTTGTTGCATCTGTGGCTTCTTCACGCTGCTCCCT GAGATTGCTTGGATATCCACACTGCCATTTTGTGGTCCAAATCAAATCCACAACATTTTC TGTGACCTTGATCCTATCCTGAATCTAGCATGTGTAGACACTGGCCCAGTTGTTTTAATC AAGGTTGTGGACATTGTACATGCTGTGGAGATCATCACAGCTATAATGCTTGTGACTTTG GCTTACGTCCAAATTATTGCAGTGATCCTAAGAAACTGCTCTGCTGATGGATGCCAAAAG GCATTTTCTACCTATGCTTTCCACCTTGCTATTTTCTTAATCTTTTTTGGAAGTGTAGCC CTGATGTACCTGCTCTTCTCTGCCAAGTACTCCTTTTTCTGGGACACAACCATCAGCCTA ATGTTTGCAGTGCTGTCACCGACACAATCATCTGTAGTCTGAGGAATAAAGAGATAAAGG AAGCAATAAAAAAGCACATGTGCCAATCAATGATATGCACACATCATGTCAAATAAGACC AAATACACACC |
| Conceptual translation |
SXQVIHPPQPPKVLGLXXTAPSWLLFFILLLLIYLFTIIGSLMVFFAIKLDFCLHSS LYFFISVLSFLEIWYTTITIPKMFFNLASEQKTTSLDGCLLQMYFFYSLGITEVCLLTTR AMDRYLAICNHLCYPTVTTPXYTQVILGCCICGFFTLLPEIAWISTLPFCGPNQIHNIF CDLDPILNLACVDTGPVVLIKVVDIVHAVEIITAIMLVTLAYVQIIAVILRNCSADGCQK AFSTYAFHLAIFLIFFGSVALMYLLFSAKYSFFWDTTISLMFAVLSPT/IICSLRNKEI KEAIKKHMCQSMICTHHVKXQIHT Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
| 1 | 158,664,483 | 158,664,483 | SNP | A/G | rs34542525 (DbSNP) | |
| 1 | 158,664,674 | 158,664,674 | SNP | C/A | rs2820123 (DbSNP) | |
| 1 | 158,664,732 | 158,664,732 | SNP | C/T | rs73028094 (DbSNP) | |
| 1 | 158,664,871 | 158,664,871 | SNP | G/A | rs167819 (DbSNP) | |
| 1 | 158,664,972 | 158,664,972 | SNP | C/T | rs12023371 (DbSNP) | |
| 1 | 158,665,117 | 158,665,117 | SNP | C/G | rs703126 (DbSNP) | |
| 1 | 158,665,256 | 158,665,255 | Ins(1) | -/C | rs35490186 (DbSNP) | |
| 1 | 158,694,693 | 158,694,693 | SNP | A/G | 1000GP (CEU) | |
| 1 | 158,695,182 | 158,695,182 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 1 | 158,695,327 | 158,695,327 | SNP | C/G | 1000GP (CEU, CHBJPT) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.