OR6K4P Olfactory Receptor
| Gene Symbol | OR6K4P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | K |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR1-16, OR1-19, HsOR1.4.14P, ORL3064 |
| External Ids | HGNC: 15031 GeneBank: AB065632, BK004530, BK004558, NG_004288 ORDB: ORL3064 |
| Build #39 labels | OR6K4P |
| Chromosomal location | 1:158,724,155-158,725,036 (-) |
| Cluster | 1@159a |
| Synteny | CLIC#4 |
| Remarks | Coding for partial protein |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR6K3 | 80.61% | 294 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6K4 | 90% | 294 |
| Mouse | Or6k4 | 93% | 294 |
| Rat | Or6k4 | 90% | 294 |
| Cow | OR6K4 | 90% | 294 |
| Orang | OR6K4 | 96% | 294 |
| Orang | OR6K4B | 96% | 294 |
| Horse | OR6K4 | 90% | 294 |
| Chimp | OR6K4 | 98% | 294 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10856_at |
Sequence information
| Nucleotide sequence |
GTAACAGAGTTTCTCTTCTCTGGATTCCCACAGTTTGAAGATGGTAGCCTCCTCTTCTTC ATTCCATTGTTTGTTATCTACATATTCATTGTCATTGGGAATCTTATTGTATTTTTTGCA GTCAGGGTGGATACCCGTCTCCACAACCCCATGTATAATTTTATCAGCATTTTCTCATTT CTGGAGATCTGGTACACAACTGCCACAATTCCCAAGATGCTCTCCATCCTCATCAGCAGG CAGAGGACCATCTCCATGGTTGGCTGCCTCTTGCAGATGTACTTCTTCCATTCACTGGGA AATTCAGAGGGGATTTTGTTGACCACCATGGCCATTGATAGGTACGTTGCCATCTGTAAC CCTCTCCGCTACCCAACCATCATGACCCCCGGGCTCTGTGTTCAGCTCTCTGTGGGGTCC TGCATCTTTGGCTTTCTTGTGTTGCTCCCAGAGATTGCATGGATTTCCACACTGCCCTTC TGTGGACCCAACCAAATCCACCAGATCTTCTGTGATTTTGAACCTGTGCTGCGCTTGGCC TGTACAGACACGTCCATGATTCTGATTGAGGATGTGATCCATGCTGTGGCCATTGTATTC TCTGTCCTGATTATTGCCCTTTCTTATATCAGAATCATCACTGTAATCCTGAGGATTCCC TCTGTTGAAGGCCGCCAGAAGGCCTTTTCTACCTGTGCCGCCCATCTTAGTGTCTTTCTG ATGTTCTATGGCAGTGTATCCCTCATGTACCTGCGTTTCTCTGCCACTTTCCCACCGATT TTGGACACAGCTGTTGCACTGATGTTTGCAGTTCTTGCTCCCTTTTTCAACCCTATCATC TATAGCTTTAGAAATAAGGACATGAAGATTGCAATTAAAAAG |
| Conceptual translation |
VTEFLFSGFPQFEDGSLLFFIPLFVIYIFIVIGNLIVFFAVRVDTRLHNPMYNFISIFSF LEIWYTTATIPKMLSILISRQRTISMVGCLLQMYFFHSLGNSEGILLTTMAIDRYVAICN PLRYPTIMTPGLCVQLSVGSCIFGFLVLLPEIAWISTLPFCGPNQIHQIFCDFEPVLRLA CTDTSMILIEDVIHAVAIVFSVLIIALSYIRIITVILRIPSVEGRQKAFSTCAAHLSVFL MFYGSVSLMYLRFSATFPPILDTAVALMFAVLAPFFNPIIYSFRNKDMKIAIKK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 158,694,444 | 158,694,444 | SNP | A/G | rs432335 (DbSNP) | |
| 1 | 158,694,109 | 158,694,109 | SNP | A/G | rs10489842 (DbSNP) | |
| 1 | 158,693,978 | 158,693,978 | SNP | A/G | rs16840708 (DbSNP) | |
| 1 | 158,694,208 | 158,694,208 | SNP | A/G | rs703143 (DbSNP) | |
| 1 | 158,694,563 | 158,694,563 | SNP | A/G | rs703144 (DbSNP) | |
| 1 | 158,694,108 | 158,694,108 | SNP | A/G/T | rs387817 (DbSNP) | |
| 1 | 158,694,730 | 158,694,730 | SNP | C/T | rs703145 (DbSNP) | |
| 1 | 158,724,188 | 158,724,188 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 1 | 158,724,319 | 158,724,319 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 1 | 158,724,418 | 158,724,418 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 1 | 158,724,654 | 158,724,654 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 1 | 158,724,773 | 158,724,773 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 1 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 158,691,945 | 158,694,926 | Deletion | #179 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.