OR6K5P Olfactory Receptor
| Gene Symbol | OR6K5P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | K |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR1-20, HsOR1.4.15P, ORL3065 |
| External Ids | HGNC: 15032 GeneBank: BK004674, NG_004363 ORDB: ORL3065 |
| Build #39 labels | OR6K5P |
| Chromosomal location | 1:158,742,568-158,743,415 (-) |
| Cluster | 1@159a |
| Synteny | CLIC#4 |
| Remarks | Disrupted by Alu repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR6K3 | 69.37% | 284 |
| OR6K4P | 73.91% | 276 |
| OR6K6 | 65.36% | 280 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6K5 | 84% | 284 |
| Mouse | Or6k14 | 78% | 281 |
| Rat | Or6k14b | 78% | 284 |
| Cow | OR6K5 | 85% | 284 |
| Orang | OR6K16P | 76% | 284 |
| Horse | OR6K5 | 87% | 284 |
| Chimp | OR6K4 | 74% | 281 |
Sequence information
| Nucleotide sequence |
ATGGATCCAGAGAATCAGACAATGGTGACTGAGTTTTATTTCTCTGATTTTCCTCAATCT AAGAATGGCAGCCTCTTATTCTTCATTCCTATGCTCTTTATTTATATATTCATTCTTGTT GGAAATTTCATGATTTTCTTTGCTGTCCAACCGGACCCCCATCTCCATAATCCTATGTAC AGTTTTATCAGTGTCTTCTCCTTCCTGGAGATTTGGTACACCACCGTGACTATCCCCAAG ATGCTCTCCAACCTTCTCAGTGAACAGAAAACCATCTCTTTCATAGGTTGCCTCCTGCAG ATGTACTTCTTCCACTCACTCGGGGTCACAGAAGCCCTAGTCCTCACAGTGATGGCCATT GACAGGTGTGTAGCCATCTGCAACCCCCTTCGCTATGCAATCACTATGTCCCCTTGACTG TGCATCCAGCTCTCCACTGGCTCTTGCATTTTTGGCTTCCTCATGTTACTGCCAGAGATT GTGTGCATTTCCACTCTTCCATTCTGTGGCGCCAACCAAATTCATCAACTCTTTTGTGAC TTTGAACCTGTGCTGCAGTTGGCCTGCACAGATACGTAAATAATTCTGGTTGAAGATGTG ATCCGTGCTATTTCCATTCTGACCTCTGTCTCTGTCATCACCCTTTTCTATTTAAGAATC ATCACGGTGATCCTGAGGATTCCCTCTGGTGAGAGCCGTCAGAAGGCTTTCTCCACATGT GCAGCCCACATTGCTATTTTCTTGCTGTTTTTTGGCAGTGTGTCACTCATGTATCTGCGC TTCTCTGTCACATTCCCACCATTACTGGACAAGGCCATTGCACTGATGTTTGCTGTCCTT GCCCTACT |
| Conceptual translation |
MDPENQTMVTEFYFSDFPQSKNGSLLFFIPMLFIYIFILVGNFMIFFAVQPDPHLHNPMY SFISVFSFLEIWYTTVTIPKMLSNLLSEQKTISFIGCLLQMYFFHSLGVTEALVLTVMAI DRCVAICNPLRYAITMSPXCIQLSTGSCIFGFLMLLPEIVCISTLPFCGANQIHQLFCD FEPVLQLACTDTXILVEDVIRAISILTSVSVITLFYLRIITVILRIPSGESRQKAFSTC AAHIAIFLLFFGSVSLMYLRFSVTFPPLLDKAIALMFAVLALLFLFFFFFFFLRRSLALS PRLECSGGIS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 1 | 158,712,048 | 158,712,369 | Del(321) | Del | rs72184812 (DbSNP) | |
| 1 | 158,712,493 | 158,712,493 | SNP | A/G | rs2518516 (DbSNP) | |
| 1 | 158,712,510 | 158,712,510 | SNP | G/A | rs2820132 (DbSNP) | |
| 1 | 158,712,627 | 158,712,627 | SNP | G/T | rs2564856 (DbSNP) | |
| 1 | 158,712,645 | 158,712,645 | SNP | C/T | rs2852645 (DbSNP) | |
| 1 | 158,712,727 | 158,712,727 | SNP | A/T | rs12076003 (DbSNP) | |
| 1 | 158,713,057 | 158,713,057 | SNP | C/T | rs383863 (DbSNP) | |
| 1 | 158,742,703 | 158,742,703 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 1 | 158,742,837 | 158,742,837 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 1 | 158,742,855 | 158,742,855 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 1 | 158,742,897 | 158,742,897 | SNP | T/G | 1000GP (CEU) | |
| 1 | 158,743,267 | 158,743,267 | SNP | T/C | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 158,711,525 | 158,712,980 | CopyNumber | Variation_97522 (DGV) |
| 1 | 158,711,800 | 158,712,613 | InDel | Variation_60894 (DGV) |
| 1 | 158,711,946 | 158,712,477 | InDel | Variation_42725 (DGV) |
| 1 | 158,712,047 | 158,712,369 | InDel | Variation_39662 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.