OR6L1P Olfactory Receptor
| Gene Symbol | OR6L1P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | L |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | ORL3270 |
| External Ids | HGNC: 15124 GeneBank: HS18QT086, NG_002282 ORDB: ORL3270 |
| Build #39 labels | OR6L1P |
| Chromosomal location | 10:133,575,153-133,576,065 (-) |
| Cluster | 10@135 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR6L2P | 98.68% | 302 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6AE1 | 54% | 310 |
| Mouse | Or6ae1 | 58% | 310 |
| Rat | Or6ae1 | 58% | 311 |
| Cow | OR6AE1P | 60% | 248 |
| Orang | OR6L2P | 80% | 295 |
| Horse | OR6AE1 | 58% | 323 |
| Chimp | OR6A2 | 41% | 307 |
Sequence information
| Nucleotide sequence |
TGCTGAGAAGTGACTTGCCTGACCAGGAGGGCCACGTACAATTCCAGCAATACTGTGGTG ACAGAGTTTGTGTTTCTGAGCTTCCCAGAGCTGCACCATCTTCAAGGGCTGCTATTTGGT CACTCCTCATCATCTATGTGGTGACCATCCTAGAGGACCTGGCTGTCGTGGGGACCATCA GAGCCAGCCACCACCTGCACATATCCACACACCTCTTCCTGGCCCAACTCTCGGTGCTGG AGACTCTGTACACCTCGGTCACCGTCCCAAAGCTGTTGGCCGGACTCCCAGCACGAGCGA CGACCATCTATCTCCTTCTCGGGGCACCTCACCTGGCTGCTCCTCTTCCTCTCACTCAGC TCCTCTGAGTGCGTCCTCCCGGCCAACATGGACTGTGACTGGCACCCAGTCATCTGCCAC CTGCTGCACTACCCAGCCCATCATGGACTCCATGCAGCTGGCTCTGCCTGCACCTGGCCA TCAGCGCCCAGCTCAGCAGCTTCCCAGCCTCCTTTGTGTCCACGGCTCTCAACTCCAGCC TGAGGCTCCGCAGCCCCGATGTCCTCAACCACTTCTGTGATATCCCACCCCCGCTAGGGC TCTCTTGCTCCAGCACCACTACCATAGAAATGCGGACTCAGGCAGCCCAGGTGATCCTTG CGGCTTCCCTGCAGGCAACCACGGTCTCCTACACCCACATCCTGGCCAGATCGCTGAGGA TTCCAGAAAGGCCCAGCAGCTAAAGGCCTTCCCCACCTATGCCTCCCACCTGGGGTGGCG GCTCCTCTAACCTCATCAAGCTGGTGTCAGGGGTCTACTTGGTTGGGATCCCTCTGCTCA AACCCATCATCTACTGCCTGGGAACTGCAACATCAGGGAGGCCCTGGCCAAACTCCTCCA GGCCCTTCCCCTT |
| Conceptual translation |
CXVTCLTRRATYNSSNTVVTEFVFLSFPELHHLQGLLFG/LLIIYVVTILEDLAVVGT IRASHHLHISTHLFLAQLSVLETLYTSVTVPKLLAGLP/TSDDH/ISFSGHLTWLLLF LSLSSSECVLPANMDCDWHPVICHLLHYPAHHGLHAA/LCLHLAISAQLSSFPASFVST ALNSSLRLRSPDVLNHFCDIPPPLGLSCSSTTTIEMRTQAAQVILAASLQATTVSYTHIL ARSLRIP/KAQQLKAFPTYASHLGWR\SNLIKLVSGVYLVGIPLLKPIIYCL/NCNI REALAKLLQALPL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 10 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI) | |
| 10 | 133,575,821 | 133,575,821 | SNP | A/G | 1000GP (CEU) | |
| 10 | 133,575,841 | 133,575,841 | SNP | G/T | 1000GP (CEU) | |
| 10 | 133,575,971 | 133,575,971 | SNP | T/C | 1000GP (CEU) | |
| 10 | 133,575,994 | 133,575,994 | SNP | C/G | 1000GP (CEU) | |
| 10 | 135,387,362 | 135,387,362 | large insertion | 6681bp insertion | rs72226744 (DbSNP) | |
| 10 | 135,389,268 | 135,389,268 | SNP | C/T | rs55916570 (DbSNP) | |
| 10 | 135,389,345 | 135,389,345 | SNP | G/T | rs56046513 (DbSNP) | |
| 10 | 135,389,367 | 135,389,367 | SNP | C/T | rs11498470 (DbSNP) | |
| 10 | 135,389,402 | 135,389,402 | SNP | C/T | rs55875421 (DbSNP) | |
| 10 | 135,389,414 | 135,389,414 | SNP | C/T | rs56211898 (DbSNP) | |
| 10 | 135,389,476 | 135,389,476 | SNP | A/G | rs11498471 (DbSNP) | |
| 10 | 135,389,512 | 135,389,512 | SNP | T/C | rs2248516 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 152 (Hasin) | |||
| 10 | 135,018,168 | 135,432,685 | CopyNumber | Variation_2896 (DGV) |
| 10 | 135,079,862 | 135,434,551 | CopyNumber | Variation_8673 (DGV) |
| 10 | 135,184,119 | 135,434,551 | CopyNumber | Variation_8671 (DGV) |
| 10 | 135,184,421 | 135,434,551 | CopyNumber | Variation_34537 (DGV) |
| 10 | 135,202,594 | 135,434,303 | CopyNumber | Variation_29602 (DGV), Variation_53644 (DGV) |
| 10 | 135,217,956 | 135,434,303 | CopyNumber | Variation_48475 (DGV) |
| 10 | 135,222,326 | 135,390,508 | CopyNumber | Variation_3830 (DGV) |
| 10 | 135,228,871 | 135,390,508 | CopyNumber | Variation_2162 (DGV) |
| 10 | 135,237,022 | 135,400,723 | CopyNumber | Variation_65826 (DGV) |
| 10 | 135,249,289 | 135,391,722 | CopyNumber | Variation_75467 (DGV) |
| 10 | 135,252,350 | 135,505,981 | CopyNumber | Variation_30527 (DGV) |
| 10 | 135,266,389 | 135,434,303 | CopyNumber | Variation_53803 (DGV) |
| 10 | 135,269,955 | 135,434,551 | CopyNumber | Variation_8670 (DGV), Variation_34564 (DGV) |
| 10 | 135,303,032 | 135,402,200 | CopyNumber | Variation_53096 (DGV) |
| 10 | 135,324,909 | 135,434,551 | CopyNumber | Variation_8672 (DGV) |
| 10 | 135,339,868 | 135,515,044 | CopyNumber | Variation_65825 (DGV) |
| 10 | 135,343,170 | 135,431,688 | CopyNumber | Variation_75465 (DGV) |
| 10 | 135,350,470 | 135,477,925 | CopyNumber | Variation_71203 (DGV) |
| 10 | 135,352,013 | 135,434,303 | CopyNumber | Variation_9647 (DGV), Variation_29600 (DGV), Variation_48482 (DGV), Variation_53611 (DGV) |
| 10 | 135,352,100 | 135,434,303 | CopyNumber | Variation_48483 (DGV) |
| 10 | 135,357,239 | 135,434,303 | CopyNumber | Variation_48484 (DGV) |
| 10 | 135,371,105 | 135,422,505 | CopyNumber | Variation_8674 (DGV) |
| 10 | 135,371,730 | 135,431,688 | CopyNumber | Variation_75473 (DGV) |
| 10 | 135,383,954 | 135,391,240 | CopyNumber | Variation_31787 (DGV) |
| 10 | 135,386,657 | 135,389,669 | CopyNumber | #153 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.