OR6R1P Olfactory Receptor
| Gene Symbol | OR6R1P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | R |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR1-41, HsOR1.5.13P, ORL3075 |
| External Ids | HGNC: 15037 GeneBank: AB065448, BK004588, NG_004270 ORDB: ORL3075 |
| Build #39 labels | OR6R1P |
| Chromosomal location | 1:247,833,360-247,834,288 (-) |
| Cluster | 1@248 |
| Synteny | CLIC#5 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR6J1 | 52.49% | 301 |
| OR6M1 | 52.33% | 300 |
| OR6T1 | 49.34% | 304 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6M1 | 53% | 301 |
| Mouse | Or6b6 | 47% | 309 |
| Rat | Or6b6 | 46% | 309 |
| Cow | OR6AN1 | 54% | 304 |
| Orang | OR6R1BP | 89% | 310 |
| Horse | OR6R14P | 66% | 312 |
| Chimp | OR6R6P | 95% | 218 |
Sequence information
| Nucleotide sequence |
ATGGAAAGGGGAAATTGGACATTGGTGACTGAGTTTATTCTTGTGGGGATACCAACCACC AGAGCCCTTGGGGGCCTCCTCTTTGTGATTTTTTATCAGCCTATTTGGTGACAGTCCTTG GAAACACCCTTATTATTATCCTGATTCTTGTGGATTACAGGCTCCACTCACCCATGTATT TCTTCCTCAGCAATCTCTCTTTCAGTGAAACATTAACCATAACCTGTGCTGTTCCTAAGA TGCTGGAGGGCTTCCCGTCGGAAAGGAAGAGCATCACAAGTGGCGAATGCTCTGCACAGT CCTATTTCTATTTTCTTTCCGGATGCACTGAGTTTATTCCTTTTGCTGTCATGTCCTATG ACCGCTATGTGGCCATTTGCAGTCCTCTTCAGTACCCTGCAATTATGACCAGCTCACTCT GTGCCCACCTCGTCATCCTCTCCTGGGTGGGTGGCTTTCTCCTCATGCTCCCATCCACCA TCCTCAAGGCAGGACTGCCACACTGTGGTCCCAACGTGATTGAGCACTTTTTCTGTGACA GCGCCCCTCTCCTCCACCTGGCCTGTGCTGACATTCGTGCTATTGAGCTGTTGGACTTTC TCAGCTCACTGGTCCTGATCCTCAGCTCCCTCTCACTCACAGTGGTCTCCTATGTTTACA TCATCTCCACCATTCTGAAGATACCCTCAGGCCAAGGTCAACGCAAAGCCTTTGCCACCT GTGCCTCTCACTTCACGGTGGTCTCCGTGGGCTATGGGATCTCCATCTTTGTCTATGTTC ACCCCTCACAGAAGAGCAGCCTGCACCTCAACAAGATCCTCTTTATCCTCTCCAGCATCA TCACACCCCTCCTGAATCCCTTCGTCTTCAGTCTGTGGAATGAACCCATGAAAGATGCAC TGAAGGACGCCTCGGCCGGAGGACAGAGC |
| Conceptual translation |
MERGNWTLVTEFILVGIPTTRALGGLLFVI/LSAYLVTVLGNTLIIILILVDYRLHSPM YFFLSNLSFSETLTITCAVPKMLEGFPSERKSITSGECSAQSYFYFLSGCTEFIPFAVMS YDRYVAICSPLQYPAIMTSSLCAHLVILSWVGGFLLMLPSTILKAGLPHCGPNVIEHFFC DSAPLLHLACADIRAIELLDFLSSLVLILSSLSLTVVSYVYIISTILKIPSGQGQRKAFA TCASHFTVVSVGYGISIFVYVHPSQKSSLHLNKILFILSSIITPLLNPFVFSLWNEPMKD ALKDASAGGQS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 247,996,951 | 247,996,954 | Del(4) | -/GTGA | rs35033596 (DbSNP) | |
| 1 | 247,996,956 | 247,996,959 | Del(4) | -/TGAG | rs74163813 (DbSNP) | |
| 1 | 247,996,889 | 247,996,889 | In-Del(1) | T/GT | rs4925731 (DbSNP) | |
| 1 | 247,996,715 | 247,996,715 | SNP | A/G | rs74152833 (DbSNP) | |
| 1 | 247,997,271 | 247,997,271 | SNP | A/G | rs61613675 (DbSNP) | |
| 1 | 247,996,667 | 247,996,667 | SNP | A/G | rs61856532 (DbSNP) | |
| 1 | 247,996,678 | 247,996,678 | SNP | A/G | rs74152831 (DbSNP) | |
| 1 | 247,996,855 | 247,996,855 | SNP | A/G | rs74152834 (DbSNP) | |
| 1 | 247,996,889 | 247,996,889 | SNP | A/G | rs74152835 (DbSNP) | |
| 1 | 247,997,114 | 247,997,114 | SNP | A/T | rs10788726 (DbSNP) | |
| 1 | 247,996,706 | 247,996,706 | SNP | C/G | rs74152832 (DbSNP) | |
| 1 | 247,996,890 | 247,996,890 | SNP | C/T | rs4925732 (DbSNP) | |
| 1 | 247,996,673 | 247,996,673 | SNP | C/T | rs4925730 (DbSNP) | |
| 1 | 247,996,973 | 247,996,973 | SNP | G/T | rs4925733 (DbSNP) | |
| 1 | 247,996,939 | 247,996,939 | SNP | G/T | rs74152836 (DbSNP) | |
| 1 | 247,833,371 | 247,833,371 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 1 | 247,833,376 | 247,833,376 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 1 | 247,833,404 | 247,833,404 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 1 | 247,833,413 | 247,833,413 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 1 | 247,833,587 | 247,833,587 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 1 | 247,833,588 | 247,833,588 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 1 | 247,833,650 | 247,833,650 | SNP | T/A | 1000GP (CEU) | |
| 1 | 247,833,656 | 247,833,656 | SNP | A/G | 1000GP (CEU) | |
| 1 | 247,833,671 | 247,833,671 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 1 | 247,833,812 | 247,833,812 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 1 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 247,753,334 | 248,322,316 | CopyNumber | Variation_2358 (DGV) |
| 1 | 247,714,585 | 248,277,146 | CopyNumber | Variation_3339 (DGV) |
| 1 | 247,074,430 | 248,328,835 | CopyNumber | Variation_6816 (DGV) |
| 1 | 247,753,207 | 248,376,070 | CopyNumber | Variation_8353 (DGV) |
| 1 | 247,849,473 | 248,277,638 | CopyNumber | Variation_48302 (DGV) |
| 1 | 247,849,473 | 248,285,441 | CopyNumber | Variation_48303 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.