OR6U2P Olfactory Receptor
| Gene Symbol | OR6U2P1 (View this gene in GeneCards) |
| Family | 6 |
| Subfamily | U |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR12-8, HsOR12.5.25P |
| External Ids | HGNC: 19631 GeneBank: AB065556, BK004557, NG_004348 |
| Build #39 labels | OR6U2P, OR6U1P |
| Chromosomal location | 12:55,611,623-55,612,554 (+) |
| Cluster | 12@56 |
| Synteny | CLIC#31 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2AP1 | 56.86% | 306 |
| OR6C4 | 54.9% | 306 |
| OR6C76 | 55.37% | 307 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR6C45P | 59% | 306 |
| Mouse | Or6c63-ps | 58% | 310 |
| Rat | Or6c63 | 57% | 308 |
| Cow | OR6C63 | 58% | 307 |
| Orang | OR6C76P | 54% | 306 |
| Horse | OR6U2 | 85% | 311 |
| Chimp | OR6U2 | 96% | 311 |
Sequence information
| Nucleotide sequence |
ATGGCCAATCAGACTGTGGTGACTGAGTTCTTCCTCCAAGGCCTGACGGATACCAAAGAG CTTCAGGTGGCTGTTTTTCTGCTCCTGCTGCTTGCCTACCTTGTGACTGTCTCTGGGAAC CTGATCATCATCAGCCTGACCTTGCTGGACACCCGCCTGCAGACATCTATGTACTTATTT CTCCAGAATCTGTCCTGCTTAGAAATTTGGTTCCAGACAGTCATCGTGCCCAAGATGCTG CTCAACATTGCCATGGGGACCAAGACCGTTAGCTTTGCTGGGTGCATTACCCAGGACTTT TTCCACATCTTCTGGGGGCCACAGAGTTCTTCCTCCTCACAGCCATGGCCTATGACCAGT ATATTGCCATCTGCAAGCCCCTCCACTACCCCATGCTCATAAGTAGTAGAGTCTGCACAC AGCTCATCCTCACCTGCTGGCTACTAGGTTTCTCCTTCATCATCATGCCTGTCATCCTGA CCAGTCAGCTTCCATTCTGTGATACCCACATCAAGCATTTCTTCTGTGACTACACGCCTC TAATGGAGGTGGTCTGCAGTGGGCCAAAGGTGCTGGAGATGGTGGATTTTACCCTGGCCT TAGTAGCACTGTTTGGCACCTTGGTACTCATCACCCTGTCCTATGTCCAGATCATCCAGA CAATTGTCAGAATCCCCGCTGTCCAGGAGAGGAAGAAGGCTTTCTCTACCTGTTCCTCTC ATGTCATTATGGTTACCATGTGTTATGACAGCTGCTTCTTTATGTATGTCAAGCCCTCTC CAGGAAAGTGGGTTGATGTCAACAAGGGAGTGTCTCTAATCAATACAATTATTGCCCCAC TGTTAAATCCCTTCATCTGTACTCTGAGGAACCAACAAGTTAAGCAGGTAATGAAAGACC TAGTCAGAAAAATGACTTTGTTCCAAAATAAA |
| Conceptual translation |
MANQTVVTEFFLQGLTDTKELQVAVFLLLLLAYLVTVSGNLIIISLTLLDTRLQTSMYLF LQNLSCLEIWFQTVIVPKMLLNIAMGTKTVSFAGCITQDFFHI/LGATEFFLLTAMAYD QYIAICKPLHYPMLISSRVCTQLILTCWLLGFSFIIMPVILTSQLPFCDTHIKHFFCDYT PLMEVVCSGPKVLEMVDFTLALVALFGTLVLITLSYVQIIQTIVRIPAVQERKKAFSTCS SHVIMVTMCYDSCFFMYVKPSPGKWVDVNKGVSLINTIIAPLLNPFICTLRNQQVKQVMK DLVRKMTLFQNK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 56,005,632 | 56,005,632 | SNP | A/G | rs55761398 (DbSNP) | |
| 12 | 56,005,409 | 56,005,409 | SNP | A/G | rs55853765 (DbSNP) | |
| 12 | 55,611,848 | 55,611,848 | SNP | G/A | 1000GP (CEU) | |
| 12 | 55,611,945 | 55,611,945 | SNP | A/G | 1000GP (CEU) | |
| 12 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 109 (Hasin) | |||
| 12 | 56,005,307 | 56,008,338 | CopyNumber | #129 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.