OR7A19P Olfactory Receptor
| Gene Symbol | OR7A19P1 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR12.2.1P, ORL3670 |
| External Ids | HGNC: 15337 GeneBank: NG_004313 ORDB: ORL3670 |
| Build #39 labels | OR7A19P |
| Chromosomal location | 12:46,592,573-46,593,305 (+) |
| Cluster | 12@47 |
| Synteny | CLIC#0 |
| Remarks | Disrupted by Line repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7A15P | 63.82% | 152 |
| OR7A17 | 66.2% | 142 |
| OR7A8P | 66.2% | 142 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7A23 | 63% | 145 |
| Mouse | Or7a41 | 49% | 214 |
| Rat | Or7a41 | 50% | 210 |
| Cow | OR7A77 | 62% | 150 |
| Orang | OR7A10C | 68% | 148 |
| Horse | OR7A205P | 59% | 149 |
| Chimp | OR7A75P | 97% | 150 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h07522_at |
Sequence information
| Nucleotide sequence |
AGAGCGAGACTCCATTTCAAAAAAAAAAAAAAAAGTAATAATCCTAGTGTGTGTGAAGTG GTATCTCATCATGTTTTTTCTTTTTTTCATTTACTATACTTTAATGCTTATGACATAATT TTTAAAGAGGAAAATATTAGTTGGGACAATGGAAGGAGTCAGATTTTTAGGTAACACTGG AAAATTTTAAGAAGAAACAGCAAGATGATACATGAAATTATATAGACCTTATGCCAAATC CTTTACTCAGAGGACAAAACTTGTTACATACAGATACAAAGCTTGTTTTGTACTGACTTG GAAATCCCAAACTTTTTCTGTGAACTTAATTAGGTGGTCCACCTTGCCTGTTCTGACACC TTTCTCAAAGACATAGTGAGGTATTGTACAACTATGCTGCTGAGTGGTGGTCCCATTGCT GGTATTTTTTTACTCTTTCTCTAAGATCATTTCATCCATATGTGCAATCCCATCAGCTCA GGGGAAGCATAAAGCATTTCCCACCTGCGTGTCTCACCTCTCAAATATGTCCTTATTTTA TTGTAGGAGCACAGGATTGTACCTTAGTTTTGCTGCTACCCACAACTCATGCTCTAATGC AACTGCCTCAGTGAGGCACACTGTGGTTAAACCCTTACTAAACGTTTTCATCTTAAAGTC AAGTAATAAAGACATAAAATGAGCTCTGAAAGTATTCTTCAGAGGAAAGCAATGGAAGCA TCATTTTTCAAAA |
| Conceptual translation |
RARLHFKKKKKSNNPSVCEVVSHHVFSFFHLLYFNAYDIIFKEENISWDNGRSQIFRXW KILRRNSKMIHEIIXLCQILYSEDKTCYIQIQSLFCTDLEIPNFFCELNXVHLACSDT FLKDIVRYCTTMLLSGGPIAGIFL\FSKIISSICAIPSAQGKHKAFPTCVSHLSNMSLF YCRSTGLYLSFAATHNSCSNATASVRHTVVKPLLNVFILKSSNKDIKXLKVFFRGKQWK HHFSK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 46,986,390 | 46,986,389 | Ins(1) | -/A | rs71070303 (DbSNP) | |
| 12 | 46,986,374 | 46,986,373 | Ins(1) | -/A | rs34331237 (DbSNP) | |
| 12 | 46,986,738 | 46,986,738 | SNP | A/G | rs60876255 (DbSNP) | |
| 12 | 46,986,371 | 46,986,371 | SNP | C/T | rs57658610 (DbSNP) | |
| 12 | 46,987,068 | 46,987,068 | SNP | C/T | rs12311251 (DbSNP) | |
| 12 | 46,986,998 | 46,986,998 | SNP | C/T | rs12579348 (DbSNP) | |
| 12 | 46,593,215 | 46,593,215 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 12 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 14 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.