OR7E104P Olfactory Receptor
| Gene Symbol | OR7E104P1 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR13.3.2P, ORL3676 |
| External Ids | HGNC: 15343 GeneBank: HSM802224, NG_004174 ORDB: ORL3676 |
| Build #39 labels | OR7E104P |
| Chromosomal location | 13:63,836,928-63,837,673 (-) |
| Cluster | 13@64 |
| Synteny | CLIC#0 |
| Remarks | Disrupted by SATR1 repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7E156P | 97.27% | 183 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7E153 | 74% | 155 |
| Mouse | Or7e178 | 68% | 164 |
| Rat | Or7e177 | 68% | 151 |
| Cow | OR7E185P | 70% | 155 |
| Orang | OR7E31DP | 85% | 169 |
| Orang | OR7E14P | 84% | 160 |
| Orang | OR7E31P | 86% | 155 |
| Horse | OR7E225 | 70% | 161 |
| Chimp | OR7E101BP | 76% | 222 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | BX282403 |
| mRNA | AL137719 |
Sequence information
| Nucleotide sequence |
GCGATGGCGGTCCCAAGTGTCAGGGGGGGAAGAGGGGGTGGCTGTCACTCCTCGGCTCGT GGAGGCTGTCTCCCACCACTGCGATGGGGGTTCTAAGAGCCAGGGGGGAAGAGGGGCTGG TTCTCAGTCCCTGCCTCAGTGGGGGTGCCTCCCCCTCTGCGATGGGGGTCCTAAGAGCCA GCGGAGGAAGAGGGGCTGGCTCTCAGTTCCCGCCTTTTTTTTTTTTCTCAGTGTTTTAGA CGCCCAGTTGCACAACTTGATTGCCTTACAAATGACCTGCTTCCAGGATGCGGAAATTCC TAATTTCTTCTGTGACCCTTCTCAACTCCCCCATCTTGCATGTTGTGACACCTTCACCAA TAACATAATCATGTATTTCCCTGCTGTCATATTTGGTTTTCTTCCCATCTCTGGGACCCT TTTCTCTTACTATAAAATTGTTTCCTCCATTCTGAGTGTTTCATCATCACGTGGGCAGTA TAAGGCCTTCTCCACCTGTGGGTCTCACCTGTCAGTTGTTTGCTGATTTTACGGAACGGG CGTTGGAGGGTACTTCAGTTCAGATGTGTCATCTTCCCCGAGAAAGGCTGCAGTGGCCTC AGTGATGTACACGGTGATCACCCCATGCTGAACCCCTTCATCTACAGCCTGAGAAACAGG CATATTAAAAGTGTCCTGCGGCGGCCGCACAGCAGCACCGTCCAATCTCCGTGTCTTCTT AACTGTTCCATTCCTTTTGTAGTGTG |
| Conceptual translation |
AMAVPSVRGGRGGGCHSSARGGCLPPLRWGFXPGGKRGWFSVPASVG\LPLCDGGPKS QRRKRGWLSVPAFFFFLSVLDAQLHNLIALQMTCFQDAEIPNFFCDPSQLPHLACCDTFT NNIIMYFPAVIFGFLPISGTLFSYYKIVSSILSVSSSRGQYKAFSTCGSHLSVVCXYGT GVGGYFSSDVSSSPRKAAVASVMYTVI/PMLNPFIYSLRNRHIKSVLRRPHSSTVQS/ VSSXFHSFCSV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 13 | 64,411,738 | 64,411,738 | SNP | A/G | rs35896994 (DbSNP) | |
| 13 | 64,411,747 | 64,411,747 | SNP | A/G | rs2491195 (DbSNP) | |
| 13 | 63,837,426 | 63,837,426 | SNP | A/G | 1000GP (CEU) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 13 | 64,409,362 | 64,429,513 | CopyNumber | Variation_76386 (DGV) |
| 13 | 64,406,462 | 64,429,513 | CopyNumber | Variation_86875 (DGV) |
| 13 | 64,288,650 | 64,429,513 | CopyNumber | Variation_86876 (DGV) |
| 13 | 64,409,061 | 64,411,906 | Deletion | #300 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR7E104P.bApr07-unspliced | main_exon | CDS_partial | chr13 | 63,837,295 | 63,837,673 | - |
| 5UTR | chr13 | 63,837,673 | 63,838,031 | - | ||
| OR7E104P.dApr07 | main_exon | CDS_partial | chr13 | 63,837,394 | 63,837,442 | - |
| exon_5UTR | chr13 | 63,839,070 | 63,839,225 | - | ||
| exon_5UTR | chr13 | 63,843,314 | 63,843,424 | - | ||
| OR7E104P.eApr07 | main_exon | CDS_partial | chr13 | 63,837,290 | 63,837,442 | - |
| exon_5UTR | chr13 | 63,838,160 | 63,838,189 | - | ||
| exon_5UTR | chr13 | 63,839,070 | 63,839,225 | - | ||
| exon_5UTR | chr13 | 63,839,749 | 63,839,892 | - | ||
| exon_5UTR | chr13 | 63,843,314 | 63,843,558 | - | ||
| OR7E104P.iApr07 | main_exon | CDS_partial | chr13 | 63,837,009 | 63,837,442 | - |
| exon_5UTR | chr13 | 63,839,070 | 63,839,225 | - | ||
| exon_5UTR | chr13 | 63,839,749 | 63,839,892 | - | ||
| exon_5UTR | chr13 | 63,841,523 | 63,841,714 | - | ||
| OR7E104P.lApr07 | main_exon | CDS_partial | chr13 | 63,837,295 | 63,837,442 | - |
| exon_5UTR | chr13 | 63,838,160 | 63,838,238 | - | ||
| exon_5UTR | chr13 | 63,839,070 | 63,839,180 | - | ||