OR7E13P Olfactory Receptor
| Gene Symbol | OR7E13P1 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-4, PJCG2, HsOR11.17.1P, ORL3641 |
| External Ids | HGNC: 8384 GeneBank: AF065855, AF238487, AF399398, NG_002177 ORDB: ORL3641 |
| Build #39 labels | OR7E13P |
| Chromosomal location | 11:86,832,528-86,833,471 (-) |
| Cluster | 11@87 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7E109P | 85.13% | 316 |
| OR7E14P | 86.71% | 316 |
| OR7E31P | 83.81% | 315 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7E24 | 72% | 315 |
| Mouse | Or7e178 | 69% | 310 |
| Rat | Or7e173 | 65% | 310 |
| Cow | OR7E193 | 71% | 305 |
| Orang | OR7E14P | 86% | 315 |
| Orang | OR7E15P | 84% | 315 |
| Horse | OR7E225 | 70% | 314 |
| Chimp | OR7E14P | 86% | 315 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AF238487 |
Sequence information
| Nucleotide sequence |
TGTCCGAACTATACAGACCCACAGAATCTAACAGATGCTTCAAAATTCCTCCTCCTAGAA CTCTCAGAGGATCCAAAACTGCAGCTGGCCCTCGCTGGGCTGTTCCTGTTCATGTACCTA GTCATGGTGCTGGAGAATCTGCTCATTATCCTGGCCGTCAGCTCTGACTTCCACCTCCAC ACCCCCATGTACTTCTTCCTCTCCAACCTGTCCTTGGCTGACATCGGTTTCACCTCCAAC ACGGTCCCCAAGATGATTGTGGACATCCAATCTCACAGCAGAGTCATCTCCTATGCAGGC TGCCTGACTCAGATGTCTCTCTTTGCTGTTTTTGGAGGCATGGAAGAAAGACATGCTCCT GAGTGTGAGGGCCTATGACCGGTTTGTAGCCATCTGTCACCCTCTATATTATTCAGCCAT CATGAACCCATGTTTCTGTGGCTTCCTAGTTTTGTGTTTTTTTTTTTCTCAGTCTTTTAG ACTCCCAGCTGCACAATTTGATTGCCTTACAAATGACCTGCATCAAGGATGTGGAAATTC CTAATTTCTTCTGTGACCCTTCTCAACTCCCACACCTTGCGTGTTGTGACACCTTCACCA ATAACATAGTCATGTATTTCCTTGCTGCCATATTTGGTTTTCTTCCTATCTCACGGATCA TTTTCTCTTACTATAAAATTGTTTCCTCCATGCTGAGTGTTTCATCATCAGGTGGGAAGT ATAAAGCCTTCTCCACCTGTGGGTCTCCCCTGTCAGTTGTTTGCTTATTTTATGGAAAAG TCGTTGGGGGGTACCTGAGTTCAGATGTGTCATCTTCCCCCAGAAAGGGTGCAGTGGCCT CAATGATGTACACGGTGATCACCCCCATGCTGAACCCCTTCATCTACAGACTGAGAAACA GGGACATCAAAAGGGTCCTGTGGTGGTTGCATGGCAGAACAGTT |
| Conceptual translation |
CPNYTDPQNLTDASKFLLLELSEDPKLQLALAGLFLFMYLVMVLENLLIILAVSSDFHLH TPMYFFLSNLSLADIGFTSNTVPKMIVDIQSHSRVISYAGCLTQMSLFAVFGGMEE\ML LSVRAYDRFVAICHPLYYSAIMNPCFCGFLVL//FFFLSLLDSQLHNLIALQMTCIKD VEIPNFFCDPSQLPHLACCDTFTNNIVMYFLAAIFGFLPISRIIFSYYKIVSSMLSVSSS GGKYKAFSTCGSPLSVVCLFYGKVVGGYLSSDVSSSPRKGAVASMMYTVITPMLNPFIYR LRNRDIKRVLWWLHGRTV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 86,543,611 | 86,543,610 | Ins(1) | -/C | rs35559301 (DbSNP) | |
| 11 | 86,543,609 | 86,543,609 | SNP | A/G | rs58868873 (DbSNP) | |
| 11 | 86,543,880 | 86,543,880 | SNP | A/G | rs7129435 (DbSNP) | |
| 11 | 86,544,429 | 86,544,429 | SNP | A/G | rs56020143 (DbSNP) | |
| 11 | 86,544,110 | 86,544,110 | SNP | A/G | rs61906680 (DbSNP) | |
| 11 | 86,544,357 | 86,544,357 | SNP | C/T | rs73520800 (DbSNP) | |
| 11 | 86,544,264 | 86,544,264 | SNP | G/T | rs2511881 (DbSNP) | |
| 11 | 86,833,155 | 86,833,155 | SNP | G/A | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 220 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR7E13P.aApr07-unspliced | main_exon | CDS_partial | chr11 | 86,832,586 | 86,833,104 | - |