OR7E24 Olfactory Receptor
| Gene Symbol | OR7E241 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | E |
| Pseudogene | No |
| CORP pseudogene probability score | |
| Aliases | CIT-B-440L2, OR19-8, OR19-14, HsOR19.2.14 |
| External Ids | HGNC: 8396 GeneBank: AF399400, BK004227, HSHT2, NR_002146 |
| Build #39 labels | OR7E24P |
| Chromosomal location | 19:9,251,044-9,252,060 (+) |
| Cluster | 19@9b |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7E100P | 75.96% | 337 |
| OR7E19P | 75.69% | 325 |
| OR7E25P | 79.82% | 327 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7E153 | 79% | 313 |
| Mouse | Or7e178 | 75% | 308 |
| Rat | Or7e173 | 69% | 308 |
| Cow | OR7E186 | 73% | 330 |
| Orang | OR7E24P | 94% | 320 |
| Horse | OR7E225 | 75% | 319 |
| Chimp | OR7E25P | 82% | 313 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | BX279722 |
| mRNA | Y10529 |
| GNF Atlas2 | 215463_at |
Sequence information
| Nucleotide sequence |
ATGTCCTATTTTCCAATTCTCTTTTTTTTTTTCCTCAAAAGGTGTCCGAGCTACACAGAG CCACAGAATCTCACAGGTGTCTCAGAATTCCTCCTCCTGGGACTCTCAGAGGATCCAGAA CTGCAGCCGGTCCTCGCTGGGCTGTTCCTGTCCATGTACCTGGTCACGGTGCTGGGGAAC CTGCTCATCATCCTGGCTGTCAGCTCTGACTCCCACCTCCACACCCCCATGTACTTCTTC CTCTCCAACCTGTCCTTGGCTGACATCGGTTTCACCTCCACCACGGTCCCCAAGATGATT GTGGACATGCAAACTCACAGCAGAGTCATCTCCTATGAAGGCTGCCTGACTCAGATGTCT TTTTTTGTCCTTTTTGCATGTATGGATGACATGCTCCTGAGTGTGATGGCCTATGACCGG TTTGTGGCCATCTGTCACCCCCTGCACTACCGAATCATCATGAACCCACGCCTCTGTGGC TTCTTAATCTTGTTGTCTTTTTTTATTAGTCTTTTGGACTCCCAGTTGCACAATTTGATT ATGTTACAGCTCACCTGCTTCAAGGATGTGGACATTTCTAATTTCTTCTGTGACCCTTCT CAACTCCTCCACCTTAGGTGTTCCGACACCTTCATCAATGAAATGGTCATATATTTCATG GGTGCCATATTTGGCTGTCTCCCTATCTCAGGGATCCTTTTCTCTTACTATAAAATTGTT TCCCCCATTCTGAGAGTTCCAACATCAGATGGGAAGTATAAAGCCTTCTCCACCTGTGGC TCTCACCTGGCAGTTGTTTGCTTATTTTATGGAACAGGGCTTGTAGGGTACCTCAGTTCA GCTGTGTTACCATCCCCCAGGAAGAGTATGGTGGCTTCAGTGATGTACACTGTGGTCACC CCCATGCTGAACCCCTTCATCTACAGCCTGAGGAACAAGGACATTCAAAGTGCCCTGTGC AGGCTGCATGGCAGAATCATCAAATCTCATCATCTCCATCCTTTTTGTTATATGGGA |
| Conceptual translation |
MSYFPILFFFFLKRCPSYTEPQNLTGVSEFLLLGLSEDPELQPVLAGLFLSMYLVTVLGN LLIILAVSSDSHLHTPMYFFLSNLSLADIGFTSTTVPKMIVDMQTHSRVISYEGCLTQMS FFVLFACMDDMLLSVMAYDRFVAICHPLHYRIIMNPRLCGFLILLSFFISLLDSQLHNLI MLQLTCFKDVDISNFFCDPSQLLHLRCSDTFINEMVIYFMGAIFGCLPISGILFSYYKIV SPILRVPTSDGKYKAFSTCGSHLAVVCLFYGTGLVGYLSSAVLPSPRKSMVASVMYTVVT PMLNPFIYSLRNKDIQSALCRLHGRIIKSHHLHPFCYMG Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 19 | 100 | -100 | NS | C/T | P/S | 1000GP (YRI) |
| 19 | 100 | -100 | SYN | C/T | S/S | 1000GP (YRI) |
| 19 | 9,251,091 | 9,251,091 | SYN | G/A | P/P | 1000GP (CHBJPT) |
| 19 | 9,251,621 | 9,251,621 | NS | C/T | S/F | 1000GP (CEU, CHBJPT) |
| 19 | 9,251,667 | 9,251,667 | SYN | C/T | S/S | 1000GP (CEU, CHBJPT) |
| 19 | 9,251,767 | 9,251,767 | NS | C/T | P/S | 1000GP (CEU, CHBJPT) |
| 19 | 9,361,767 | 9,361,767 | SYN | A/G | P/P | rs60144766 (DbSNP) |
| 19 | 9,362,297 | 9,362,297 | NS | C/T | S/F | rs12980833 (DbSNP) |
| 19 | 9,362,336 | 9,362,336 | Del(1) | -/G | rs34185242 (DbSNP) | |
| 19 | 9,362,343 | 9,362,343 | SYN | C/T | S/S | rs2240927 (DbSNP) |
| 19 | 9,362,443 | 9,362,443 | NS | C/T | P/S | rs2240928 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| T56M | I64V | S193F | P242S | % Freq | CORP | |
|---|---|---|---|---|---|---|
| 1 | T | I | S | P | 48.85 | 0.347 |
| 2 | T | I | S | S | 39.78 | 0.347 |
| 3 | T | I | F | S | 6.53 | 0.347 |
| 4 | T | V | S | S | 4.61 | 0.347 |
| 5 | M | V | S | S | 0.23 | 0.347 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR7E24.aApr07-unspliced | main_exon | CDS | chr19 | 9,251,044 | 9,252,060 | + |
| 3UTR | chr19 | 9,252,060 | 9,252,479 | + | ||