OR7E43P Olfactory Receptor
| Gene Symbol | OR7E43P1 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR4-116, OR4-4, HsOR4.1.3P, ORL3122 |
| External Ids | HGNC: 8417 GeneBank: BK004733 ORDB: ORL3122 |
| Build #39 labels | OR7E43P |
| Chromosomal location | 4:4,174,321-4,175,290 (-) |
| Cluster | 4@4b |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7E26P | 86.96% | 322 |
| OR7E36P | 87.77% | 327 |
| OR7E37P | 87.73% | 326 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7E24 | 68% | 323 |
| Mouse | Or7e178 | 66% | 310 |
| Rat | Or7e173 | 64% | 304 |
| Cow | OR7E193 | 67% | 318 |
| Orang | OR7E15P | 90% | 320 |
| Horse | OR7E225 | 69% | 314 |
| Chimp | OR7E36P | 88% | 323 |
| Chimp | OR7E14P | 86% | 320 |
| Chimp | OR7E33P | 86% | 316 |
Sequence information
| Nucleotide sequence |
TTTCAACCCTCTTTTCTAGGCAAAAGGTGTCCAAACTCTACAGACCCACAGAATGTAACG GATGTCTCTCGATTCCTCCTCCTCAAACTCTCAGAGGATCCAGAACTGCAGCCGGTCCTT GCTGGGCTGTTCCTGTCCATGTGCCTGGTCACGGTGCTGGGGAACCTGCTCATCATCCTG GCCGTCAGCCCTGACTCCCACCTCCACACTTCCATGTACTTCTTCCTCTCCAACCTGTCC TTGCCTGACATCGGTTTCCCCTCCCCCACGGTCCCCAAGATGGTTGTGGACATCCAATCT CACAGCAGTCATCTCCTATGCAGGCTGCCTGACTCAGATGTCTCTCTTTGCCATTTTTGG AGGCATGGAAGAGACACATGCTCCTGAATGTGATGGCCTATGTCCGGTTTGTAGCCATCT GTCACCCTCTATATCATTCAGCCATCATGAACCCGTGTTTCTGTGGCTTCTTACTTTTGT TGTCTTTTTTTTTTCTCGGTCTTTTAGACGCCCAGCTGCACAACATGATTGCCTTACAAA TGACCTGCTTCAAGGATGTGGAAATTCCTAATTTCTTCTGTGATCCTTCTCAACTCCCCC ATCTTGCATGTTGTGACACCTTCACCAATAACATCATCATGTATTTCCCTGCTGCCGTAT TTGGTTTCCTTCCCATCTCGGGGACCCTTTTCTCTTACTCTAAAATTGTTTCCTCCATTC TGAGGGTTTCGTCATCAGGTGGGAAGTATAAACCTTCTCCACCTGTGGGTCTCACCTGTC AGTTTTTTGCTGATTTTATGGAACAGGCATTGGAGGGTACCTCAGTTCAGATGTGTCATC TTCCCTGAGAAAGGCTGCAGTGGCCTCACTGATGTACAAGATGGTCACCCCCATGCTGAA CCCCTCCATCTACAGCCTGAGAAACAGGGATATTAAAAGTGTCCTGCGGCAGCCGCACGG CAGCACGGTC |
| Conceptual translation |
FQPSFLGKRCPNSTDPQNVTDVSRFLLLKLSEDPELQPVLAGLFLSMCLVTVLGNLLIIL AVSPDSHLHTSMYFFLSNLSLPDIGFPSPTVPKMVVDIQSH\VISYAGCLTQMSLFAIF GGMEE\MLLNVMAYVRFVAICHPLYHSAIMNPCFCGFLLLLSFFFLGLLDAQLHNMIAL QMTCFKDVEIPNFFCDPSQLPHLACCDTFTNNIIMYFPAAVFGFLPISGTLFSYSKIVSS ILRVSSSGGKYK/FSTCGSHLSVFCXYGTGIGGYLSSDVSSSLRKAAVASLMYKMVTP MLNPSIYSLRNRDIKSVLRQPHGSTV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 4 | 4,176,712 | 4,176,711 | Ins(2) | -/CT | rs35002176 (DbSNP) | |
| 4 | 4,176,201 | 4,176,201 | SNP | A/C | rs28375212 (DbSNP) | |
| 4 | 4,176,085 | 4,176,085 | SNP | A/C | rs28681234 (DbSNP) | |
| 4 | 4,176,703 | 4,176,703 | SNP | A/G | rs2887349 (DbSNP) | |
| 4 | 4,176,905 | 4,176,905 | SNP | A/G | rs2887351 (DbSNP) | |
| 4 | 4,176,343 | 4,176,343 | SNP | A/T | rs62290061 (DbSNP) | |
| 4 | 4,176,903 | 4,176,903 | SNP | C/T | rs28603313 (DbSNP) | |
| 4 | 4,176,287 | 4,176,287 | SNP | C/T | rs12499056 (DbSNP) | |
| 4 | 4,176,209 | 4,176,209 | SNP | C/T | rs11933759 (DbSNP) | |
| 4 | 4,176,067 | 4,176,067 | SNP | C/T | rs12501414 (DbSNP) | |
| 4 | 4,176,735 | 4,176,735 | SNP | C/T | rs2887350 (DbSNP) | |
| 4 | 4,174,616 | 4,174,616 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 4 | 4,174,560 | 4,174,560 | SNP | C/T | 1000GP (CHBJPT) | |
| 4 | 100 | -100 | SNP | T/A | 1000GP (YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 4 | 3,823,172 | 4,262,068 | InversionBreakpoint | Variation_0346 (DGV) |
| 4 | 3,394,344 | 4,350,986 | CopyNumber | Variation_3477 (DGV) |
| 4 | 3,923,728 | 4,199,760 | CopyNumber | Variation_51403 (DGV) |
| 4 | 4,122,303 | 4,187,960 | CopyNumber | Variation_80153 (DGV), Variation_91888 (DGV) |
| 4 | 3,950,135 | 4,187,960 | CopyNumber | Variation_91887 (DGV) |
| CopyNumber | 67 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.