OR7E55P Olfactory Receptor
| Gene Symbol | OR7E55P1 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR2DG, OST013, OR3.2, HsOR3.2.3P, ORL3096 |
| External Ids | HGNC: 8430 GeneBank: NG_004370 ORDB: ORL3096 |
| Build #39 labels | OR7E55P, OR7E56P |
| Chromosomal location | 3:75,370,413-75,371,363 (-) |
| Cluster | 3@75 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7E148P | 88.33% | 317 |
| OR7E59P | 88.44% | 320 |
| OR7E84P | 88.44% | 320 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7E153 | 70% | 308 |
| Mouse | Or7e178 | 65% | 314 |
| Rat | Or7e173 | 63% | 309 |
| Cow | OR7E186 | 70% | 300 |
| Orang | OR7E14P | 85% | 317 |
| Orang | OR7E12P | 84% | 314 |
| Orang | OR7E53P | 83% | 314 |
| Horse | OR7E220 | 68% | 313 |
| Chimp | OR7E36P | 87% | 315 |
| Chimp | OR7E14P | 86% | 317 |
| Chimp | OR7E59P | 85% | 317 |
Sequence information
| Nucleotide sequence |
AACGATACAGACCCACAGAGTCTAACAGATGTCTCTATATTCCTCCTCCTCGAACTCTCA GAGGATCCAGAACTGCAGCCGGTCCTCGCTGGGCTGTTCCTGTCCATGTGCCTGGTCACG GTGCTCAGGAACCTGCTCATCATCCTGGCCATCAGCCCTGACTCCCACCTCCACACCCCC ATGTACTTCTTCCTCTCCAACCTGTCCTTTCCTGACATCGGTTTCACCTCCACCACAGTC CCCAAGATGATTGTGGACATCCAGTCTCACAGCAGAGTCATCTCCTATGCAGGCTGCCTG ACTCAGATGTCTCTCTTTGCCATTTTTGGAGACATGGAAGAGAGACATGTTCCTGAGTGT GGTGGCCTATGACCGGTTTGTAGCCATCTGTCACCCTCTATATCGTTCAGCCATCTTAAA CCCCTGTTTCTGTGGCTTCCTAGATTCGTTGTCCTTGTTTTTTTTTTTTTTTTTTCTCAG TCTTTTAGACTCCCAGCTGCACAACTTGATTGCCTTACAAACGACCTGCTTCAAGGATGT GGAAATTCCTAATTTCTTCTGGGAACCTTCTCAACTCCCCCATCTTGCATGTTGTGACAT CTTCACCAGGAACATCAACCTGTATTTCCCTGCTGCCATATTTGGTTTTCTTCCCATCTC GGGGACGCTTTTCTCTTACTATAAAATTGTTTCCTTCATTCTGAGGGTTTCATCATCAGG TGGGAAGTATAAACCTTCTCCGCCTGTGGGTCTCATCTGTCAGTTGTTTACTGATTTTAT GGAACAGGCTTTGGAGGGTACCTCAGTTCAGATGTGTCATCTTCCCCGAGAAAGGGTGCA GTGGCCTCAGTGATGTACACGGTGGTCACCCCCATGCTGAACCCCTTCATCTACAGCCTG AGAAACGGGGATATTAAAAGTGTCCTGCGGCAGCCGCACGGCAGCACAGTC |
| Conceptual translation |
NDTDPQSLTDVSIFLLLELSEDPELQPVLAGLFLSMCLVTVLRNLLIILAISPDSHLHTP MYFFLSNLSFPDIGFTSTTVPKMIVDIQSHSRVISYAGCLTQMSLFAIFGDMEE\MFLS VVAYDRFVAICHPLYRSAILNPCFCGFL\RCP/FFFFFFLSLLDSQLHNLIALQTTCF KDVEIPNFFWEPSQLPHLACCDIFTRNINLYFPAAIFGFLPISGTLFSYYKIVSFILRVS SSGGKYK/FSACGSHLSVVYXYGTGFGGYLSSDVSSSPRKGAVASVMYTVVTPMLNPF IYSLRNGDIKSVLRQPHGSTV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 3 | 75,420,058 | 75,420,057 | Ins(1) | -/A | rs55912815 (DbSNP) | |
| 3 | 75,420,040 | 75,420,039 | Ins(1) | -/A | rs34802034 (DbSNP) | |
| 3 | 75,419,687 | 75,419,687 | SNP | A/C/G | rs1054460 (DbSNP) | |
| 3 | 75,420,180 | 75,420,180 | SNP | A/G | rs62259093 (DbSNP) | |
| 3 | 75,420,117 | 75,420,117 | SNP | A/G | rs9713678 (DbSNP) | |
| 3 | 75,420,157 | 75,420,157 | SNP | A/G | rs72899080 (DbSNP) | |
| 3 | 75,419,993 | 75,419,993 | SNP | A/G | rs9713670 (DbSNP) | |
| 3 | 75,419,666 | 75,419,666 | SNP | A/T | rs72496269 (DbSNP) | |
| 3 | 75,419,740 | 75,419,740 | SNP | C/A | rs2091865 (DbSNP) | |
| 3 | 75,419,736 | 75,419,736 | SNP | T/G | rs2091866 (DbSNP) | |
| 3 | 75,370,585 | 75,370,585 | SNP | T/G | 1000GP (CEU) | |
| 3 | 75,370,589 | 75,370,589 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 3 | 75,371,006 | 75,371,006 | SNP | A/G | 1000GP (CEU) | |
| 3 | 75,371,029 | 75,371,029 | SNP | A/G | 1000GP (CEU) | |
| 3 | 100 | -100 | SNP | T/G | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 3 | 75,392,078 | 76,003,036 | CopyNumber | Variation_2462 (DGV) |
| 3 | 75,346,159 | 75,619,247 | CopyNumber | Variation_3433 (DGV) |
| 3 | 75,244,279 | 75,595,933 | CopyNumber | Variation_5366 (DGV) |
| 3 | 75,250,088 | 75,853,296 | CopyNumber | Variation_5367 (DGV) |
| 3 | 75,392,373 | 75,776,083 | CopyNumber | Variation_8986 (DGV) |
| 3 | 75,392,078 | 75,639,910 | CopyNumber | Variation_8987 (DGV) |
| 3 | 75,392,373 | 75,676,582 | CopyNumber | Variation_34587 (DGV) |
| 3 | 75,379,085 | 75,428,675 | CopyNumber | Variation_51163 (DGV) |
| 3 | 75,382,434 | 75,506,050 | CopyNumber | Variation_51164 (DGV) |
| 3 | 75,382,434 | 75,568,219 | CopyNumber | Variation_51165 (DGV) |
| 3 | 75,391,759 | 75,568,219 | CopyNumber | Variation_51166 (DGV) |
| 3 | 75,388,161 | 75,568,219 | CopyNumber | Variation_53840 (DGV) |
| 3 | 75,381,808 | 75,700,055 | CopyNumber | Variation_63499 (DGV) |
| 3 | 75,417,564 | 75,420,614 | Deletion | #264 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.