OR7E85P Olfactory Receptor
| Gene Symbol | OR7E85P1 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR4.2.3P, ORL3120 |
| External Ids | HGNC: 14692 GeneBank: NG_002249, XM_497958 ORDB: ORL3120 |
| Build #39 labels | OR7E85P, OR7E88P |
| Chromosomal location | 4:9,483,703-9,484,730 (+) |
| Cluster | 4@9 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7E129P | 90.64% | 342 |
| OR7E87P | 90.59% | 340 |
| OR7E99P | 90.35% | 342 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7E24 | 65% | 331 |
| Mouse | Or7e178 | 62% | 310 |
| Rat | Or7e173 | 59% | 310 |
| Cow | OR7E186 | 62% | 329 |
| Orang | OR7E103P | 88% | 307 |
| Orang | OR7E163P | 89% | 299 |
| Orang | OR7E103BP | 87% | 301 |
| Horse | OR7E225 | 66% | 318 |
| Chimp | OR7E163P | 87% | 320 |
| Chimp | OR7E161P | 87% | 320 |
| Chimp | OR7E163MP | 86% | 320 |
| Chimp | OR7E115P | 85% | 320 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | AW009208 |
Sequence information
| Nucleotide sequence |
CTGGTTTTTATCTTTTATTTTTCCAATACTCTTTCCTTCTCAAGGTGTCCAAGACACACA GAGCCACGGAATCTCACAGGTGTCTGAGAATTCCTCCTCCTGGGACTTTCAGAGGATCCA GAGCTGCAGTCGGTCCTCGCTTTGCTGTCCCTGTCCCTGTCCACGTATCTGGCCACGGTG CTGAGGAACGTGCTCAACATCCTGGCTGTCAGCTCTGACTCCCCCCTCCACACCCCCATG TACTTCTTCCTCTCCAACCTGTGCTGGGCTGACATCGGTTTCACCTCGGCCACGGTTCCC AAGATGATTGTGGACATGCAGTCGTATAGTAGAGTCATCTCTCATGAGGGCTGCCTCACA CAGATGTCTTTCTTGGTCCTTTTTGCATGTATAGAAGGCATGATCCTGACTGTGATGGCC TATGACTGCTTTGTAGCCATCTGTCGCCCTCTGCATTACCCAGTCATCGTGAATCCTCAC CTCTGTGTCTTTTTCGTTTTGGTGTCCTTTTTCCTTAGCCTGTTGGATTCCCAGCTGCAC AGTTGAATTGTGTTACAATTCACCATCATCAAGAATGTGGAAATCTCTAATTTTGTCTGT GACCCCTCTCAATTTCTCAAACTTGCCTGTTCTGACAGCGTCATCAATAGCATATTCACG TATTTCCATAGTACTATGTTTGGTTTTCTTCCCATTTCAGGGATCCTTTTGTCTTACTTT AAAATCGTCACCTTCATTCTCTGGATTTCATCTTCAGATGGGAAGTATAAAGCCTTCTCC ACCTGTGACTCTCACCTAGCAGTTGTTTGCTGATTTTATGGAACAGGCATTGGCATGTAC CTGACTTCAGCTGTGTCACCACCCCCAGGAATGGTGTAGTGGCGTCAATGATGTACGCTG TGGTCACCCCCATGCTGAACCTTTTCATCTACAGCCTGAGAAACAGGGACATACAAAGTG CCCTGCGGAGGCTGCTCAGCAGAACAGTCGAATCTCATGATCTGTTCAATCGTTTTTCTT GTGTGGGT |
| Conceptual translation |
LVFIFYFSNTLSFSRCPRHTEPRNLTGVXFLLLGLSEDPELQSVLALLSLSLSTYLATV LRNVLNILAVSSDSPLHTPMYFFLSNLCWADIGFTSATVPKMIVDMQSYSRVISHEGCLT QMSFLVLFACIEGMILTVMAYDCFVAICRPLHYPVIVNPHLCVFFVLVSFFLSLLDSQLH SXVLQFTIIKNVEISNFVCDPSQFLKLACSDSVINSIFTYFHSTMFGFLPISGILLSYF KIVTFILWISSSDGKYKAFSTCDSHLAVVCXYGTGIGMYLTSAVSP/PRNGVVASMMY AVVTPMLNLFIYSLRNRDIQSALRRLLSRTVESHDLFNRFSCVG Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 4 | 9,485,912 | 9,485,912 | SNP | A/C | rs34152452 (DbSNP) | |
| 4 | 9,486,066 | 9,486,066 | SNP | A/C | rs9759877 (DbSNP) | |
| 4 | 9,485,803 | 9,485,803 | SNP | A/C | rs3975564 (DbSNP) | |
| 4 | 9,485,377 | 9,485,377 | SNP | A/C | rs35560755 (DbSNP) | |
| 4 | 9,486,357 | 9,486,357 | SNP | A/C | rs9283694 (DbSNP) | |
| 4 | 9,486,316 | 9,486,316 | SNP | A/G | rs56849506 (DbSNP) | |
| 4 | 9,486,176 | 9,486,176 | SNP | A/G | rs9291468 (DbSNP) | |
| 4 | 9,485,546 | 9,485,546 | SNP | A/G | rs2865024 (DbSNP) | |
| 4 | 9,485,472 | 9,485,472 | SNP | A/G | rs2865021 (DbSNP) | |
| 4 | 9,486,376 | 9,486,376 | SNP | A/G | rs10213634 (DbSNP) | |
| 4 | 9,486,361 | 9,486,361 | SNP | C/G | rs10213633 (DbSNP) | |
| 4 | 9,485,706 | 9,485,706 | SNP | C/G | rs3975577 (DbSNP) | |
| 4 | 9,485,539 | 9,485,539 | SNP | C/G | rs2902911 (DbSNP) | |
| 4 | 9,486,183 | 9,486,183 | SNP | C/G | rs62410295 (DbSNP) | |
| 4 | 9,485,642 | 9,485,642 | SNP | C/T | rs2865025 (DbSNP) | |
| 4 | 9,485,674 | 9,485,674 | SNP | C/T | rs2865026 (DbSNP) | |
| 4 | 9,485,624 | 9,485,624 | SNP | C/T | rs72477713 (DbSNP) | |
| 4 | 9,485,513 | 9,485,513 | SNP | C/T | rs2865023 (DbSNP) | |
| 4 | 9,486,312 | 9,486,312 | SNP | C/T | rs10212792 (DbSNP) | |
| 4 | 9,485,841 | 9,485,841 | SNP | C/T | rs10212937 (DbSNP) | |
| 4 | 9,485,547 | 9,485,547 | SNP | C/T | rs2902912 (DbSNP) | |
| 4 | 9,485,479 | 9,485,479 | SNP | C/T | rs2865022 (DbSNP) | |
| 4 | 9,485,717 | 9,485,717 | SNP | C/T | rs2865027 (DbSNP) | |
| 4 | 9,485,679 | 9,485,679 | SNP | C/T | rs3975576 (DbSNP) | |
| 4 | 9,486,345 | 9,486,345 | SNP | C/T | rs9759890 (DbSNP) | |
| 4 | 9,486,325 | 9,486,325 | SNP | G/T | rs10212947 (DbSNP) | |
| 4 | 9,486,060 | 9,486,060 | SNP | G/T | rs9762741 (DbSNP) | |
| 4 | 9,484,156 | 9,484,156 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 4 | 9,484,362 | 9,484,362 | SNP | G/A | 1000GP (CEU) | |
| 4 | 9,484,419 | 9,484,419 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 4 | 9,484,436 | 9,484,436 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 4 | 9,484,444 | 9,484,444 | SNP | T/A | 1000GP (CEU) | |
| 4 | 9,484,451 | 9,484,451 | SNP | C/G | 1000GP (CEU) | |
| 4 | 9,484,421 | 9,484,421 | SNP | T/A | 1000GP (CHBJPT) | |
| 4 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 4 | 8,707,676 | 9,852,717 | InversionBreakpoint | Variation_0347 (DGV) |
| 4 | 9,400,938 | 9,594,059 | CopyNumber | Variation_0699 (DGV), Variation_2069 (DGV) |
| 4 | 8,705,921 | 9,811,805 | CopyNumber | Variation_2497 (DGV) |
| 4 | 8,522,173 | 10,273,779 | CopyNumber | Variation_3479 (DGV) |
| 4 | 9,371,116 | 9,513,465 | CopyNumber | Variation_9469 (DGV), Variation_51485 (DGV), Variation_53971 (DGV) |
| 4 | 9,371,116 | 9,719,981 | CopyNumber | Variation_9470 (DGV) |
| 4 | 9,381,818 | 9,681,651 | CopyNumber | Variation_34433 (DGV) |
| 4 | 9,442,659 | 9,497,345 | CopyNumber | Variation_36314 (DGV) |
| 4 | 9,442,758 | 9,488,227 | CopyNumber | Variation_36315 (DGV) |
| 4 | 9,449,613 | 9,499,818 | CopyNumber | Variation_36316 (DGV) |
| 4 | 9,480,235 | 9,586,764 | CopyNumber | Variation_37604 (DGV) |
| 4 | 9,371,116 | 9,573,740 | CopyNumber | Variation_51486 (DGV) |
| 4 | 9,379,592 | 9,513,465 | CopyNumber | Variation_51488 (DGV) |
| 4 | 9,371,116 | 9,599,790 | CopyNumber | Variation_53853 (DGV) |
| 4 | 9,371,116 | 9,486,579 | CopyNumber | Variation_59613 (DGV) |
| 4 | 9,324,682 | 9,496,122 | CopyNumber | Variation_68668 (DGV) |
| CopyNumber | 2 (Hasin) | |||
| 4 | 9,485,250 | 9,488,377 | Deletion, CopyNumber | #260 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR7E85P.aApr07-unspliced | main_exon | CDS_partial | chr4 | 9,483,901 | 9,484,730 | + |
| 3UTR | chr4 | 9,484,730 | 9,484,768 | + | ||