OR7E99P Olfactory Receptor
| Gene Symbol | OR7E99P1 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR4-3, HsOR4.1.2P, ORL3124 |
| External Ids | HGNC: 15059 GeneBank: AF399415, BK004561, NG_004262 ORDB: ORL3124 |
| Build #39 labels | OR7E99P |
| Chromosomal location | 4:4,156,479-4,157,503 (-) |
| Cluster | 4@4b |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| 91.81% | 342 | |
| OR7E129P | 92.69% | 342 |
| OR7E87P | 92.65% | 340 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7E24 | 66% | 331 |
| Mouse | Or7e178 | 64% | 310 |
| Rat | Or7e173 | 58% | 310 |
| Cow | OR7E186 | 64% | 329 |
| Orang | OR7E103P | 91% | 307 |
| Orang | OR7E163P | 91% | 298 |
| Orang | OR7E163RP | 91% | 298 |
| Horse | OR7E225 | 67% | 318 |
| Chimp | OR7E163P | 90% | 319 |
| Chimp | OR7E161P | 90% | 319 |
| Chimp | OR7E7P | 92% | 307 |
| Chimp | OR7E115P | 88% | 319 |
Sequence information
| Nucleotide sequence |
CTGGTTTTTATCTTTTATTTTTCCAATCCTCTTTCCTTCTCAAGGTGTCCAAGACACACA GAGCCACGGAATCACACAGGGGTCTGAGAATTTCTCCTCCTGGGACTCTCAGAGGATCCA GAACTGCAGCCGGTCCTCGCTTTGCTGTCCCTGTCCCTGTCCATGTATCTGGTCACGGTG CTGAGGAACCTGCTCAGCATCCTGGCTGTCCGCTCTGACTCCCCCCTCCACAACCCCATG TACTTCTTCCTCTCCAACCTGTGCTGGGCTGACATCGGTTTCACCTCGGCCACGGTTGCC AAGATGATTGTGGAATGCAGTCGCATAGCAGAGTCATCTCTCATGCGGGCTGCCTGACGC AGATGTCTTTCTTGGTCCTTTTTGCATGTATAGAAGGCATGCTCCTGACTGTGATGGCCT ATGACTGCTTTGTAGCCATCTGTCGTCCTCTGCACTACCCAGTCATCGTGAATCCTCACC TCTGTGTCTTCTTCGTTTTGGTGTCCTTTTTCCTTAGCCTGTTGGATTCCCAGCTGCACA GTTCGATTGTGTTACAATTCACCATCATCAAGAATGTGGAAATCTCTCATTTTGTCTGTG ACCCCTCTCATCTTCTCAAACTTGCCTGTTCTGACAGCGTCATCAATAGCATATTCATAT ATTTCGATAGTACTATGTTTGGTTTTCTTCCCATTTCAGGGATCCTTTGGTCTTACTATA AAATCGTCCCCTCCATTCTAAGGATTTCATCATCAGATGGGAAGTATAAAGCCTTCGCCA CCTGTGGCTCTCACCTAGCAGTTGTTTGCTGATTTGATGGAACAGGCATTGGTATGTACC TGACTTCAGCTGTGGCACCACCCCCTAGGAATGGAGTGGTGGCATCAGTGATGTAGGCTG TGGTCACCCCCATGCTGAACCTTTTCATCTACAGCCTGAGAAACAGGGACATACAAAGTG CCCTGCGGAGGCTGCTCAGCAGAACAGTCGAATTTCATGATCTGTTTCATTCTTTTTCTT GTGTG |
| Conceptual translation |
LVFIFYFSNPLSFSRCPRHTEPRNHTGVXFLLLGLSEDPELQPVLALLSLSLSMYLVTV LRNLLSILAVRSDSPLHNPMYFFLSNLCWADIGFTSATVAKMIV/MQSHSRVISHAGCL TQMSFLVLFACIEGMLLTVMAYDCFVAICRPLHYPVIVNPHLCVFFVLVSFFLSLLDSQL HSSIVLQFTIIKNVEISHFVCDPSHLLKLACSDSVINSIFIYFDSTMFGFLPISGILWSY YKIVPSILRISSSDGKYKAFATCGSHLAVVCXDGTGIGMYLTSAVAPPPRNGVVASVMXbr/>AVVTPMLNLFIYSLRNRDIQSALRRLLSRTVEFHDLFHSFSCV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 4 | 4,130,633 | 4,130,633 | large insertion | 29491bp insertion | rs72482072 (DbSNP) | |
| 4 | 4,158,856 | 4,158,856 | SNP | A/C | rs4081930 (DbSNP) | |
| 4 | 4,158,255 | 4,158,255 | SNP | A/C | rs62288330 (DbSNP) | |
| 4 | 4,158,398 | 4,158,398 | SNP | A/G | rs9799691 (DbSNP) | |
| 4 | 4,158,842 | 4,158,842 | SNP | A/G | rs3928156 (DbSNP) | |
| 4 | 4,158,885 | 4,158,885 | SNP | A/G | rs9714982 (DbSNP) | |
| 4 | 4,158,829 | 4,158,829 | SNP | A/G | rs3952915 (DbSNP) | |
| 4 | 4,158,785 | 4,158,785 | SNP | A/G | rs1865327 (DbSNP) | |
| 4 | 4,158,365 | 4,158,365 | SNP | A/G | rs9799690 (DbSNP) | |
| 4 | 4,158,620 | 4,158,620 | SNP | A/T | rs35462216 (DbSNP) | |
| 4 | 4,158,933 | 4,158,933 | SNP | C/G | rs4018319 (DbSNP) | |
| 4 | 4,159,176 | 4,159,176 | SNP | C/G | rs4018321 (DbSNP) | |
| 4 | 4,158,834 | 4,158,834 | SNP | C/T | rs3952916 (DbSNP) | |
| 4 | 4,158,786 | 4,158,786 | SNP | C/T | rs4018318 (DbSNP) | |
| 4 | 4,158,736 | 4,158,736 | SNP | C/T | rs3952914 (DbSNP) | |
| 4 | 4,158,434 | 4,158,434 | SNP | C/T | rs57779269 (DbSNP) | |
| 4 | 4,158,998 | 4,158,998 | SNP | G/T | rs4018320 (DbSNP) | |
| 4 | 4,156,627 | 4,156,627 | SNP | A/T | 1000GP (CEU) | |
| 4 | 4,156,638 | 4,156,638 | SNP | A/G | 1000GP (CEU) | |
| 4 | 4,156,671 | 4,156,671 | SNP | A/G | 1000GP (CEU) | |
| 4 | 4,156,967 | 4,156,967 | SNP | G/A | 1000GP (CEU) | |
| 4 | 100 | -100 | SNP | A/G | 1000GP (YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 4 | 3,823,172 | 4,262,068 | InversionBreakpoint | Variation_0346 (DGV) |
| 4 | 3,394,344 | 4,350,986 | CopyNumber | Variation_3477 (DGV) |
| 4 | 4,106,532 | 4,168,877 | CopyNumber | Variation_36272 (DGV) |
| 4 | 3,923,728 | 4,199,760 | CopyNumber | Variation_51403 (DGV) |
| 4 | 4,113,336 | 4,170,143 | CopyNumber | Variation_80152 (DGV) |
| 4 | 4,122,303 | 4,187,960 | CopyNumber | Variation_80153 (DGV), Variation_91888 (DGV) |
| 4 | 4,137,250 | 4,161,240 | CopyNumber | Variation_80154 (DGV), Variation_91890 (DGV) |
| 4 | 3,950,135 | 4,187,960 | CopyNumber | Variation_91887 (DGV) |
| 4 | 4,125,292 | 4,164,133 | CopyNumber | Variation_91889 (DGV) |
| 4 | 4,156,206 | 4,159,330 | Deletion | #9 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.