OR8A2P Olfactory Receptor
| Gene Symbol | OR8A2P1 (View this gene in GeneCards) |
| Family | 8 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-314, HsOR11.18.37P, ORL3649 |
| External Ids | HGNC: 15306 GeneBank: BK004641, NG_004341 ORDB: ORL3649 |
| Build #39 labels | OR8A2P |
| Chromosomal location | 11:124,460,564-124,461,526 (+) |
| Cluster | 11@124 |
| Synteny | CLIC#29 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR8A1 | 74.92% | 307 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR8A1 | 74% | 307 |
| Mouse | Or8a1-ps | 69% | 307 |
| Rat | Or8a1b | 70% | 307 |
| Cow | OR8A1 | 73% | 307 |
| Orang | OR8A1 | 72% | 308 |
| Horse | OR8A1 | 73% | 307 |
| Chimp | OR8A1 | 75% | 307 |
Sequence information
| Nucleotide sequence |
ATGACTGTCAAAAGTCATTCTATAGTGACAGAGTTCAGTCTCAGGGGATTAACGAAGCAG CCAGATCTCCAGCTCTTTCACTTCCTCATTTTCCTTGATATCCATATGGTCACAATGGTG GGGAACTTGGGCATGATCACTCTAATTTGTCTTAACTCTCAGCTTCACACCCCCATGTAC TACTTCTTCAGCAATCTGTCACTCTTGGATCTCTGCTATTCCTCCATTACTAACCCTAAG ATGCTGGTGAACTTTGTGTTAAAGAAGAGCATTATCTCTTATGCAGGGTACATGTCATAG TTCTACTTTTTCCTGGTTTTTGTCATTGCTAGGTGTTACATGCTGATGGTGAAGGCCTGT GACCACTATGTTGCCATCTGCTGCCCTTTGCTTTGCAACGTCATCATGTCTCATGTCACC TGCTCCCTGATGGTGGCTGTGGTCTACACCATGGGACTCGTTGTCTCCACAATAGAGACT GGGCTCATATTAAAACTGCCCTATTGTGAACTCCTCACCAGTCGCTGCTTCTGTGACATC CTCCCTCTCATGAAACTCTCCTGATCTAGTGCCTATGATGTTGAGATGGCAGTCTTCTTT TTTGCTAGATTCAACCTGAGAATCATGATCTTAACAGTTCTTGTTTCTTACACCTTCATT CTCTTCAGCATCCTGCACATCAGCACCACTGAGGGCAGGTCCAAAGTCTTCAGCACCTGC AGCTTCCACCTTGCAGCTATAGGGATGTTCCATGGATAGACTGCATTCAGGTACTTAAAA CCCGCCATAACCAGTTCCCTGGCCCAAGAGAATGTGGCCTCTGTGTTCTACACTACAGTA ATCTACGTGCCGAATCCCCTAATGTACAGCCTGAAAAACAAGGATGTAAAAGCTGCCATG CAGAAAACACTAAGGAGTAAGTTTTGTTGCAGATGTAATTATCTTGAGTTGCTAATCAAC CCA |
| Conceptual translation |
MTVKSHSIVTEFSLRGLTKQPDLQLFHFLIFLDIHMVTMVGNLGMITLICLNSQLHTPMY YFFSNLSLLDLCYSSITNPKMLVNFVLKKSIISYAGYMSXYFFLVFVIARCYMLMVKAC DHYVAICCPLLCNVIMSHVTCSLMVAVVYTMGLVVSTIETGLILKLPYCELLTSRCFCDI LPLMKLSXSAYDVEMAVFFFARFNLRIMILTVLVSYTFILFSILHISTTEGRSKVFSTC SFHLAAIGMFHGXAFRYLKPAITSSLAQENVASVFYTTVIYVPNPLMYSLKNKDVKAAM QKTLRSKFCCRCNYLELLINP Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 124,331,111 | 124,331,111 | SNP | A/C | rs58797620 (DbSNP) | |
| 11 | 124,330,975 | 124,330,975 | SNP | A/C | rs58285921 (DbSNP) | |
| 11 | 124,330,983 | 124,330,983 | SNP | A/G | rs12787539 (DbSNP) | |
| 11 | 124,331,330 | 124,331,330 | SNP | C/G | rs12792592 (DbSNP) | |
| 11 | 124,330,757 | 124,330,757 | SNP | C/T | rs73613289 (DbSNP) | |
| 11 | 124,331,100 | 124,331,100 | SNP | C/T | rs56674022 (DbSNP) | |
| 11 | 124,331,285 | 124,331,285 | SNP | G/T | rs57379931 (DbSNP) | |
| 11 | 124,460,861 | 124,460,861 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 124,461,079 | 124,461,079 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 124,461,087 | 124,461,087 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 124,461,204 | 124,461,204 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 124,461,434 | 124,461,434 | SNP | C/G | 1000GP (CEU, CHBJPT) | |
| 11 | 124,461,487 | 124,461,487 | SNP | T/C | 1000GP (CEU) | |
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 203 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.