OR8B1P Olfactory Receptor
| Gene Symbol | OR8B1P1 (View this gene in GeneCards) |
| Family | 8 |
| Subfamily | B |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-307, OR11-561, HsOR11.18.31P, ORL3603 |
| External Ids | HGNC: 8470 GeneBank: AB065540, AF065875, AF399349, BK004675, NG_002156 ORDB: ORL3603 |
| Build #39 labels | OR8B1P, OR8B11P |
| Chromosomal location | 11:124,365,622-124,366,551 (-) |
| Cluster | 11@124 |
| Synteny | CLIC#29 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR8B2 | 76.8% | 306 |
| OR8B3 | 77.12% | 306 |
| OR8B8 | 73.62% | 307 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR8B1K | 85% | 310 |
| Dog | OR8B1J | 84% | 309 |
| Dog | OR8B1L | 84% | 309 |
| Dog | OR8B1 | 83% | 311 |
| Mouse | Or8b1 | 83% | 311 |
| Mouse | Or8b1b | 82% | 310 |
| Mouse | Or8b1c | 81% | 310 |
| Mouse | Or8b1d-ps | 81% | 310 |
| Rat | Or8b1f | 83% | 310 |
| Rat | Or8b1g | 83% | 310 |
| Rat | Or8b1c | 83% | 310 |
| Rat | Or8b1i | 83% | 310 |
| Cow | OR8B1 | 84% | 310 |
| Cow | OR8B1S | 84% | 310 |
| Cow | OR8B1T | 81% | 310 |
| Orang | OR8B1W | 85% | 310 |
| Horse | OR8B1 | 85% | 311 |
| Horse | OR8B1X | 83% | 310 |
| Horse | OR8B1Y | 83% | 310 |
| Horse | OR8B1ADP | 83% | 310 |
| Chimp | OR8B3 | 76% | 306 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529230 |
Sequence information
| Nucleotide sequence |
ATGGCACCTGGAAATGGCTCTTTCGTGACTGAATTCATTCTGGCGGGATTAACACATCAG CCAGATCTCCAGTCCCCTCTGTTCTTCCTGTTTCTAGTAATCTATGTGGTCACTCTGTTG GGAAACTTGGGCTTGGTAACTCTAATTGGGCTGAACTCACACCTTCATACCCCCATGTAC TTCTTCCTCTTTAACTTGTCCTTCATAGATCTCTGTTATTCTTCTGTGTTTACACCCAAA ATGCTAATGAACTTTATTTCAGAGAAGAATATTATCTCCTTCAAGGGGTGCATGACCCAA CTTTTCTTTTTCTGTTTTTTTTGGTCATTTCTGAATGTTATGTGCTGACGTCAATGGCGT ATGATCGCTGTGGCCATCTGTAACCCACTTCTGTATCACATTGCCATGTCTCCTACAGTG TGCTCCAGCCTTATGTTTGGTTCCTATTTGATGGCCTTTTCTGGTGCCATGGCCCACACT GGATGCATGCTGAGACTGACTTTCTGTGATGCGAACACCATCGATCACTACTTCTGTGAC ATCCTCCCTCTGCTCCAGCTCTCCTGCACCAGCACCTACATCAATGAGCTGGTGGTTTTC ACTGTGGTTGGCATCAACATCATTGTGCCCACTGTTACCATCTTTATCTCTTATGGTTTC ATCCTCTCCAGCATCCTCCATATCAGTTCCAAGGAGGGCAGGTCCAAAGCTTTCAGCACT TGCAGTTCCCATATAATTGCTGTTTCTCTGTTCTTTGGATCAGGTGCATTTATGTATCTC AACCCATCTTCTGCTGGGTCCATGGATAAGAGAAAATTATCTTCTGTCTTTTATACAAAT GTGGTTCCCATGTTGAACCCCTTAATCTACAGCCTGAGGAACAAAGATGTTAAATTTGCC CTAAGAAAAGCCCTGAGTAGTAGGAAACTT |
| Conceptual translation |
MAPGNGSFVTEFILAGLTHQPDLQSPLFFLFLVIYVVTLLGNLGLVTLIGLNSHLHTPMY FFLFNLSFIDLCYSSVFTPKMLMNFISEKNIISFKGCMTQLFFFCFF/VISECYVLTSM AYDR\AICNPLLYHIAMSPTVCSSLMFGSYLMAFSGAMAHTGCMLRLTFCDANTIDHYF CDILPLLQLSCTSTYINELVVFTVVGINIIVPTVTIFISYGFILSSILHISSKEGRSKAF STCSSHIIAVSLFFGSGAFMYLNPSSAGSMDKRKLSSVFYTNVVPMLNPLIYSLRNKDVK FALRKALSSRKL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI) | |
| 11 | 124,235,672 | 124,235,672 | SNP | C/T | rs3901494 (DbSNP) | |
| 11 | 124,235,773 | 124,235,773 | SNP | A/G | rs35878354 (DbSNP) | |
| 11 | 124,235,818 | 124,235,818 | SNP | A/G | rs17128886 (DbSNP) | |
| 11 | 124,235,988 | 124,235,987 | Ins(1) | -/A | rs34530904 (DbSNP) | |
| 11 | 124,236,268 | 124,236,268 | SNP | G/A | rs2512302 (DbSNP) | |
| 11 | 124,365,776 | 124,365,776 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 124,365,877 | 124,365,877 | SNP | G/A | 1000GP (CEU) | |
| 11 | 124,365,892 | 124,365,892 | SNP | G/T | 1000GP (CEU) | |
| 11 | 124,366,372 | 124,366,372 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 124,366,507 | 124,366,507 | SNP | C/T | 1000GP (CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 194 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.