OR8B5P Olfactory Receptor
Gene Symbol | OR8B5P1 (View this gene in GeneCards) |
Family | 8 |
Subfamily | B |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | OR11-306, OR11-300, AC002556-A, HsOR11.18.30P, ORL3598 |
External Ids | HGNC: 8474 GeneBank: BK004537, BK004649, NG_002204 ORDB: ORL3598 |
Build #39 labels | OR8B5P |
Chromosomal location | 11:124,357,551-124,358,499 (-) |
Cluster | 11@124 |
Synteny | CLIC#29 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR8B1P | 72.52% | 313 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR8B1L | 71% | 315 |
Mouse | Or8b1b | 70% | 315 |
Rat | Or8b1h | 70% | 315 |
Cow | OR8B1AJP | 70% | 315 |
Orang | OR8B1P | 73% | 314 |
Horse | OR8B1ADP | 72% | 315 |
Chimp | OR8B1P | 73% | 313 |
Sequence information
Nucleotide sequence |
ATGGCTCCTGGAAATGGCTCTTTGATGAATGAATTCATTCTGGTGGGGTTAACAGACTAG CCAGATCTTTAACTCCCTCTGTTCTTCATGTTTCTTGTAATGTATGTTGTCACTGTGATA AGAAACTTTGTCTTGGTAATTCTAACTATGCGAAATTCACGTCTTCACACTCCCAAGTAC TTTTTCCTTTCTAAATTGTTCTTCACAGACCTCTGTTATTCTTCTGTGTTTATACTCCAA CTTCCGAGGAAGTGTATTTCAGAGGAGAATGTTATCTCCTACATGGTTTGCATGATCTAG CTTTTCTTTTTCTTTTTCTGTTTTTTTTTTTTTTTAATTTATTTCTGAATGTTATATGCT GACGTCAATGGCCTATGATTGCTGTGTGGCCATCTGTTACCCACTTCTTTATCACATTGC CATGTCCCCTAAAGTGTGTTTCAGCCTTATGCTTGGTTCCTACTTCCTATCCTTTTCTGG GGCCATGGCCCACACTGGATGCATGCTGAGGCTGACCTGTGATGCAAACACCATCAATCA TTACTTCCGTGACATCCTCCCTGTGTTCCAGCTCTCCTGCACCAGCACCTACATCAATGA ACTGGTGGTTTTCATTGTGGCAGGCATCAATACCATTGTGCCCACTGTCACCGTCTTTAT CTCTTATGGTGACATCCTCTCCAGGATCCTCCACATCAGTTCCAATGAGGGAAGGTCCAA AGCCTTCAGCACTTGCAGTTCCCACATAATTGCTGTTTCTCTGTTCTTTGGATTAAGTGC ATTTATGTATCTCAAACCATCTTCTGCTGGGTCTATGGATGAGGGAAAATTCTCTTCTGT TTTTTATATGAATGGGCTTCCCATGATGAGCTCCTTAATCTACAGCTTAAGGAGGAAAGA TGTTAAATTTGCCATGGGAAAATCTCTGAGTAGGAGAATGTTTTTGCCA |
Conceptual translation |
MAPGNGSLMNEFILVGLTDXDLXPLFFMFLVMYVVTVIRNFVLVILTMRNSRLHTPKY FFLSKLFFTDLCYSSVFILQLPRKCISEENVISYMVCMIXFFFFFCFFFFLI\SECYM LTSMAYDCCVAICYPLLYHIAMSPKVCFSLMLGSYFLSFSGAMAHTGCMLRLTCDANTIN HYFRDILPVFQLSCTSTYINELVVFIVAGINTIVPTVTVFISYGDILSRILHISSNEGRS KAFSTCSSHIIAVSLFFGLSAFMYLKPSSAGSMDEGKFSSVFYMNGLPMMSSLIYSLRRK DVKFAMGKSLSRRMFLP Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
11 | 124,227,543 | 124,227,543 | SNP | A/G | rs644353 (DbSNP) | |
11 | 124,228,074 | 124,228,075 | Del(2) | -/AA | rs61223295 (DbSNP) | |
11 | 124,228,084 | 124,228,084 | SNP | A/G | rs539174 (DbSNP) | |
11 | 124,228,090 | 124,228,090 | SNP | A/G | rs539179 (DbSNP) | |
11 | 124,228,098 | 124,228,098 | SNP | A/G | rs73023606 (DbSNP) | |
11 | 124,228,144 | 124,228,144 | SNP | C/G | rs657456 (DbSNP) | |
11 | 124,357,647 | 124,357,647 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
11 | 124,357,648 | 124,357,648 | SNP | T/G | 1000GP (CHBJPT) | |
11 | 124,358,177 | 124,358,177 | SNP | A/C | 1000GP (CEU) | |
11 | 124,358,202 | 124,358,202 | SNP | A/G | 1000GP (CEU) | |
11 | 124,358,248 | 124,358,248 | SNP | C/G | 1000GP (CEU, CHBJPT) | |
11 | 124,358,254 | 124,358,254 | SNP | C/T | 1000GP (CEU) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.