OR8B5P Olfactory Receptor
| Gene Symbol | OR8B5P1 (View this gene in GeneCards) |
| Family | 8 |
| Subfamily | B |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-306, OR11-300, AC002556-A, HsOR11.18.30P, ORL3598 |
| External Ids | HGNC: 8474 GeneBank: BK004537, BK004649, NG_002204 ORDB: ORL3598 |
| Build #39 labels | OR8B5P |
| Chromosomal location | 11:124,357,551-124,358,499 (-) |
| Cluster | 11@124 |
| Synteny | CLIC#29 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR8B1P | 72.52% | 313 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR8B1L | 71% | 315 |
| Mouse | Or8b1b | 70% | 315 |
| Rat | Or8b1h | 70% | 315 |
| Cow | OR8B1AJP | 70% | 315 |
| Orang | OR8B1P | 73% | 314 |
| Horse | OR8B1ADP | 72% | 315 |
| Chimp | OR8B1P | 73% | 313 |
Sequence information
| Nucleotide sequence |
ATGGCTCCTGGAAATGGCTCTTTGATGAATGAATTCATTCTGGTGGGGTTAACAGACTAG CCAGATCTTTAACTCCCTCTGTTCTTCATGTTTCTTGTAATGTATGTTGTCACTGTGATA AGAAACTTTGTCTTGGTAATTCTAACTATGCGAAATTCACGTCTTCACACTCCCAAGTAC TTTTTCCTTTCTAAATTGTTCTTCACAGACCTCTGTTATTCTTCTGTGTTTATACTCCAA CTTCCGAGGAAGTGTATTTCAGAGGAGAATGTTATCTCCTACATGGTTTGCATGATCTAG CTTTTCTTTTTCTTTTTCTGTTTTTTTTTTTTTTTAATTTATTTCTGAATGTTATATGCT GACGTCAATGGCCTATGATTGCTGTGTGGCCATCTGTTACCCACTTCTTTATCACATTGC CATGTCCCCTAAAGTGTGTTTCAGCCTTATGCTTGGTTCCTACTTCCTATCCTTTTCTGG GGCCATGGCCCACACTGGATGCATGCTGAGGCTGACCTGTGATGCAAACACCATCAATCA TTACTTCCGTGACATCCTCCCTGTGTTCCAGCTCTCCTGCACCAGCACCTACATCAATGA ACTGGTGGTTTTCATTGTGGCAGGCATCAATACCATTGTGCCCACTGTCACCGTCTTTAT CTCTTATGGTGACATCCTCTCCAGGATCCTCCACATCAGTTCCAATGAGGGAAGGTCCAA AGCCTTCAGCACTTGCAGTTCCCACATAATTGCTGTTTCTCTGTTCTTTGGATTAAGTGC ATTTATGTATCTCAAACCATCTTCTGCTGGGTCTATGGATGAGGGAAAATTCTCTTCTGT TTTTTATATGAATGGGCTTCCCATGATGAGCTCCTTAATCTACAGCTTAAGGAGGAAAGA TGTTAAATTTGCCATGGGAAAATCTCTGAGTAGGAGAATGTTTTTGCCA |
| Conceptual translation |
MAPGNGSLMNEFILVGLTDXDLXPLFFMFLVMYVVTVIRNFVLVILTMRNSRLHTPKY FFLSKLFFTDLCYSSVFILQLPRKCISEENVISYMVCMIXFFFFFCFFFFLI\SECYM LTSMAYDCCVAICYPLLYHIAMSPKVCFSLMLGSYFLSFSGAMAHTGCMLRLTCDANTIN HYFRDILPVFQLSCTSTYINELVVFIVAGINTIVPTVTVFISYGDILSRILHISSNEGRS KAFSTCSSHIIAVSLFFGLSAFMYLKPSSAGSMDEGKFSSVFYMNGLPMMSSLIYSLRRK DVKFAMGKSLSRRMFLP Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
| 11 | 124,227,543 | 124,227,543 | SNP | A/G | rs644353 (DbSNP) | |
| 11 | 124,228,074 | 124,228,075 | Del(2) | -/AA | rs61223295 (DbSNP) | |
| 11 | 124,228,084 | 124,228,084 | SNP | A/G | rs539174 (DbSNP) | |
| 11 | 124,228,090 | 124,228,090 | SNP | A/G | rs539179 (DbSNP) | |
| 11 | 124,228,098 | 124,228,098 | SNP | A/G | rs73023606 (DbSNP) | |
| 11 | 124,228,144 | 124,228,144 | SNP | C/G | rs657456 (DbSNP) | |
| 11 | 124,357,647 | 124,357,647 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 124,357,648 | 124,357,648 | SNP | T/G | 1000GP (CHBJPT) | |
| 11 | 124,358,177 | 124,358,177 | SNP | A/C | 1000GP (CEU) | |
| 11 | 124,358,202 | 124,358,202 | SNP | A/G | 1000GP (CEU) | |
| 11 | 124,358,248 | 124,358,248 | SNP | C/G | 1000GP (CEU, CHBJPT) | |
| 11 | 124,358,254 | 124,358,254 | SNP | C/T | 1000GP (CEU) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.