OR8B6P Olfactory Receptor
| Gene Symbol | OR8B6P1 (View this gene in GeneCards) |
| Family | 8 |
| Subfamily | B |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-305, AC002556-G, HsOR11.18.29P, ORL3597 |
| External Ids | HGNC: 8475 GeneBank: AF399348, BK004676, NG_002203 ORDB: ORL3597 |
| Build #39 labels | OR8B6P |
| Chromosomal location | 11:124,338,762-124,339,734 (-) |
| Cluster | 11@124 |
| Synteny | CLIC#29 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR8B1P | 72.01% | 318 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR8B1J | 70% | 331 |
| Mouse | Or8b1 | 69% | 317 |
| Rat | Or8b1b | 68% | 318 |
| Cow | OR8B1S | 72% | 318 |
| Orang | OR8B1P | 71% | 318 |
| Horse | OR8B1X | 69% | 329 |
| Chimp | OR8B1P | 71% | 317 |
Sequence information
| Nucleotide sequence |
TTTTTTTCCTGTGTCCACAGATACCCTCAGAGAAGAATGGCTCCTGGAAATGGCTTTTTC ATGACTAAAATCATTTTGCTGGAGTTAACAGATCAGCCAGATCTCCAACTCCCTCTGTTC TTCCTGTTTCTAGTGTATGGTCACTGCGTTGGGAAATTTGGCTTGGTAACTCTCGTTGTG CTCAATTCACACCTTCATACCCCCATGTACTTTTTCCTCTTTAACTTGTCCTTCATAGAT CTCTGTTATTCTTCTGTGTTTACACCCCAAATGCTGATGAACTTCATAACACAGAAGGAT ATTATCTCCCACATGGGGTGCATGTCCCAGCTTTTCTTTTTTCTTTATTTTTTTTTGGTA TTTCTGAATGCTATGTGCTCACCTCAATGGCCTATGATCAGCATGTCACCATGATCACCA TGTAGCCATCTGTAACCCACTTTTGTATAATATTGCCATGTCCCCCAAAGTGTACTCTCA CCTTATGCTTGGTTTATACTTGCTAGCCTTTTCTAGTGCCATGGCCCACACTGGATGCAT GCTGAGACTGACCTTCTGTGATGCAAACACCATCCATCCCTATTTGTGTGACATCCTCCC TCTGCTCCAGCTCTCTTGCACCGGCACCTACATCAATGAGCTGGTGGTTTCCATTGCAGC AGTCATTATTTTCCACTGTCACCATATTTATCTCTTGTGGTTGCAGCTCCTACATCATCC TCCACATCAACTCCAAGGAGGGCAGGTCCAAAGCCTTGAACACCTGCAGTTCCAACCTAA TTGCTGTTTCTCTTAGTTTGGATCGTGTGCATTTATGTGTCTCAAACCATCTTCTGCTGG GTCCATGGATGAGGGAAAGATTTCTTCTGTCTTTTACACCAATACAGCTCCCTTGATGAA CCCCTTAATCTACAGTTTGATGAATAAAATGTTCAACTTTCTCTGAGAAAAAAACCCTAG TAGGAAAAAATTT |
| Conceptual translation |
FFSCVHRYPQRRMAPGNGFFMTKIILLELTDQPDLQLPLFFLFL\MVTALGNL/LVTL VVLNSHLHTPMYFFLFNLSFIDLCYSSVFTPQMLMNFITQKDIISHMGCMSQLFFFLY/ FFGISECYVLTSMAYD/ACHHDHHVAICNPLLYNIAMSPKVYSHLMLGLYLLAFSSAMA HTGCMLRLTFCDANTIHPYLCDILPLLQLSCTGTYINELVVSIAAVII\TVTIFISCGC SSYIILHINSKEGRSKALNTCSSNLIAV/SXGSCAFMCLKPSSAGSMDEGKISSVFYT NTAPLMNPLIYSLMNK/VQLSLRKKP\RKKF Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
| 11 | 124,208,977 | 124,208,977 | SNP | A/G | rs666135 (DbSNP) | |
| 11 | 124,209,483 | 124,209,483 | SNP | C/T | rs507118 (DbSNP) | |
| 11 | 124,209,498 | 124,209,498 | SNP | C/T | rs12225745 (DbSNP) | |
| 11 | 124,339,081 | 124,339,081 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 124,339,563 | 124,339,563 | SNP | G/A | 1000GP (CEU) | |
| 11 | 124,339,587 | 124,339,587 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 124,339,602 | 124,339,602 | SNP | C/T | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 176 (Hasin) | |||
| 11 | 124,206,658 | 124,209,730 | Deletion | #232 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.