OR8J2P Olfactory Receptor
| Gene Symbol | OR8J2P1 (View this gene in GeneCards) |
| Family | 8 |
| Subfamily | J |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-175, HsOR11.11.53P, ORL3521 |
| External Ids | HGNC: 15311 GeneBank: AB065839, AF399356, AF546686-AF546699, AY284229-AY284260, BK004692, NG_004185 ORDB: ORL3521 |
| Build #39 labels | OR8J2P |
| Chromosomal location | 11:56,210,856-56,211,820 (-) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks | Segregating Pseudo Gene, a nonsynonymous SNP T->C at position 190 (AA change=*/R ) |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR8J1 | 77.24% | 312 |
| OR8J3 | 78.14% | 311 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR8J2 | 85% | 311 |
| Dog | OR8J2C | 84% | 311 |
| Dog | OR8J2B | 84% | 311 |
| Mouse | Or8j3b | 81% | 310 |
| Rat | Or8j3d | 80% | 310 |
| Cow | OR8J2 | 85% | 311 |
| Orang | OR5E1P | 55% | 308 |
| Horse | OR8J3G | 77% | 311 |
| Chimp | OR8J2 | 98% | 311 |
Sequence information
| Nucleotide sequence |
ATGGCTTCAGGAAATCTCACATGGGTGACGGAGTTCATTCTTGTGGGAGTCTCAGATGAT CCGGAGCTCCAGATTCCCCTCTTCCTGGTCTTCCTGGTGCTCTATTTGCTGACCGTGGCA GGGAACCTGGGCATCATCACCCTCACCAGTGTTGACCCTCAACTTCAAACCCCCATGTAC TTTTTCCTCTGACACTTGGCTATTATTAATCTTTGCAATTCTACTGTCGTTGCCCCTAAA ATGCTGGTTAACTTCCTGGTTACCAAGAAAACCATATCATACTATGGATGTGCAGCCCAA CTGGGTGGATTCTTGGTTTTCATTGTGGCTGAGATTTTCACGCTGGCTGCAATGGCCTAT GACCGCTATGTGGCTATTTGGAGCCCTCTGCTCTACGCCGTAGTGGTGTCTCCAAAGGTG TGTCGTCTGCTGGTGTCCCTCACATACCTTCAGAGTCTTATCACAGCACTGACTGTCTCT TCCTGTGTGTTCTCTGTGTCATACTGTTCTTCCAACATTATCAACCATTTTTACTGTGAT GATGTCCCTTTGCTAGCATTGTCCTGTTCTGATACCTACATTCCAGAAACAGCAGTCTTT ATCTTTTCAGGGACCAACTTGCTTTTCTCCATGATCGTTGTTCTGATATCCTACTTCAAC ATTGTTATTACCATTTTGAGGATACGTTCCTCAGAAGGACGACAAAAAGCCTTTTCCACC TGTGCTTCTCACATGATAGCTGTGGTTGTGTTCTATGGGACTCTCCTTTTCATGTATTTG CAACCAAGGAGTAATCATTCATTAGATACTGACAAAATGGCTTCGGTCTTCTACACCCTG GTGATACCAGTGCTGAACCCTCTAATCTACAGCCTCAGGAACAAGAACGTGAAGGATGCA CTAAAGAGGTTCCTAGATAACCCATGCCGATCACTCAAACTAATGTAAATGTAAAGCTAA AACTA |
| Conceptual translation |
MASGNLTWVTEFILVGVSDDPELQIPLFLVFLVLYLLTVAGNLGIITLTSVDPQLQTPMY FFLXLAIINLCNSTVVAPKMLVNFLVTKKTISYYGCAAQLGGFLVFIVAEIFTLAAMAY DRYVAIWSPLLYAVVVSPKVCRLLVSLTYLQSLITALTVSSCVFSVSYCSSNIINHFYCD DVPLLALSCSDTYIPETAVFIFSGTNLLFSMIVVLISYFNIVITILRIRSSEGRQKAFST CASHMIAVVVFYGTLLFMYLQPRSNHSLDTDKMASVFYTLVIPVLNPLIYSLRNKNVKDA LKRFLDNPCRS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 11 | 55,978,361 | 55,978,361 | SNP | C/G | rs71493590 (DbSNP) | |
| 11 | 55,978,388 | 55,978,388 | SNP | C/A | rs61747890 (DbSNP) | |
| 11 | 55,978,403 | 55,978,403 | SNP | T/C | rs61740260 (DbSNP) | |
| 11 | 55,978,635 | 55,978,635 | SNP | G/A | rs61729742 (DbSNP) | |
| 11 | 55,978,721 | 55,978,721 | SNP | G/A | rs61734115 (DbSNP) | |
| 11 | 55,978,872 | 55,978,872 | SNP | T/C | rs61729560 (DbSNP) | |
| 11 | 55,978,956 | 55,978,956 | SNP | A/G | rs1481927 (DbSNP) | |
| 11 | 55,979,047 | 55,979,047 | SNP | T/G | rs61730950 (DbSNP) | |
| 11 | 55,979,107 | 55,979,107 | SNP | A/G | rs55684887 (DbSNP) | |
| 11 | 55,979,266 | 55,979,266 | SNP | C/T | rs7130251 (DbSNP) | |
| 11 | 56,210,913 | 56,210,913 | SNP | C/T | 1000GP (CHBJPT) | |
| 11 | 56,211,480 | 56,211,480 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 56,211,631 | 56,211,631 | SNP | A/G | 1000GP (CEU) | |
| 11 | 56,211,790 | 56,211,790 | SNP | C/T | 1000GP (CEU, CHBJPT) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.