OR8K4P Olfactory Receptor
| Gene Symbol | OR8K4P1 (View this gene in GeneCards) |
| Family | 8 |
| Subfamily | K |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | ORL3580 |
| External Ids | HGNC: 15314 GeneBank: NG_004184 ORDB: ORL3580 |
| Build #39 labels | OR8K4P |
| Chromosomal location | 11:56,142,515-56,143,386 (-) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks | Disrupted by Alu repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR8K5 | 58.78% | 279 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR8K5 | 55% | 270 |
| Mouse | Or8k16 | 56% | 280 |
| Rat | Or8k16 | 57% | 280 |
| Cow | OR8K5 | 57% | 283 |
| Horse | OR8K5 | 58% | 282 |
| Chimp | OR8K5P | 58% | 279 |
Sequence information
| Nucleotide sequence |
AGCTTAACTTCTTGTGATGTCTCCCTCATCACCTACCTGATCACAGTGATGAGCAACCTG GGCATGAATATTTTGACCAAACTAGACTCCCACCTATACACACCTGTTGTATATTTTTTA ATCAAACACATATTTTTCATTGATTTTTACAATTGTATTGTTATTTACACCAATAAAATG TTAAATTTTGTTGTGGATCAGAATAACATTTCCTATTATGCATGTGCCACACATATGACT TTCTTATGTTCATTATCACTGAACTTTTAATCTTGGTAAGCATGGCCTATGATTGCTATG TGGTGAACTCCAACCCTTTGTTTTACATTGTTATCATGTGTCTGTGACTGTAACATGTGC TGATGAGCATTCCATACCTCTGTAATACATTTCAATCTCTAATTATCACAATGACCTTTT TTTGACCTTCTGTAGCTTTATCATCAGTCATTTCTATTGTTATGATGTTCTCTTCTTCCA TATGCTATGCTCAAATGCACAGGAAAGAGAATTGTTGATCACACTGCTTACAGCATTTAA TTTGATCCCTACCTCCTGGTATTGCTAGTGTTAAACATTCTGATTTTGTTAGCCATATGT TGAATGCATTCTGCACTGGGCAGGAAAAAAGCTTTCTCCATGTGTGGTTCTCATCTTACA ATGGTGGTTATGTTCTATGGATCTCTACTTTTTGATATGGATAAATGGCCTCCTTGTTCT ACACTTTAATGATCCTCAGGTTTAACCTCTTGATCTACAGCTTTAGCAACTTAGGGGTTA AAAATGTCTTTTATAGAGTCTTTAAGAATTAGTGCAAACTTTGTCTTTACAGTACACTAT GGAACATTGTTCCAATAAATTATGAGAAAATA |
| Conceptual translation |
VSLITYLITVMSNLGMNILTKLDSHLYTPVVYFLIKHIFFIDFYNCIVIYTNKMLNFVVD QNNISYYACATHMTFLCS/ITELLILVSMAYDCYVVNSNPLFYIVIMCLXXVLMSIP YLCNTFQSLIITMTF/LTFCSFIISHFYCYDVLFFHMLCSNAQERELLITLLTAFNLIP T/LVLLVLNILILLAICXHSALGRKKAFSMCGSHLTMVVMFYGSLLFDMDK/ASLFY TLMILRFNLLIYSFSNLGVKNVFYRVFKNXKLCLYSTLWNIVPINYEKI Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | C/G | 1000GP (YRI) | |
| 11 | 55,909,994 | 55,909,994 | SNP | A/T | rs1384096 (DbSNP) | |
| 11 | 55,910,199 | 55,910,199 | SNP | C/G | rs12295084 (DbSNP) | |
| 11 | 55,910,795 | 55,910,795 | SNP | C/T | rs11227336 (DbSNP) | |
| 11 | 56,143,319 | 56,143,319 | SNP | T/C | 1000GP (CHBJPT) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.