OR8R1P Olfactory Receptor
| Gene Symbol | OR8R1P1 (View this gene in GeneCards) |
| Family | 8 |
| Subfamily | R |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | ORL3621 |
| External Ids | HGNC: 15318 GeneBank: NG_004181 ORDB: ORL3621 |
| Build #39 labels | OR8R1P |
| Chromosomal location | 11:73,249,315-73,249,868 (+) |
| Cluster | 11@73 |
| Synteny | CLIC#0 |
| Remarks | Disrupted by Alu repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR8B2 | 51.03% | 194 |
| OR8B3 | 51.03% | 194 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR8B3 | 52% | 195 |
| Mouse | Or8b3 | 52% | 199 |
| Rat | Or8b3 | 51% | 199 |
| Cow | OR8B3 | 51% | 195 |
| Orang | OR8B2 | 52% | 195 |
| Horse | OR8B3 | 52% | 195 |
| Chimp | OR8B2 | 52% | 195 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | BF957077 |
Sequence information
| Nucleotide sequence |
TCGCAGCTTTTCTTTCTCTTTATTGTCCTCTCTATAAATACCACGTGTTGATGTTCATAG CCTGTGGTTGCTTTGTGGCCATCTACAATCCATCATTGCATGAGGTCACCATGTCTCCTC AGGTGAGAGAGAGAGAGAGACTGGATTTGCTGGAACCACTCCCACACAGGGCACATACTT AGGCCGACCTTTTGTAGTATTGATGTCATCAACCATCATCTTATGACAGCCTCTTGGTCC TCTAAGTTTCTTGTACCAGCACCTGTGCCAATGAAGTAGTGGTTTTCACTGTGGTGGGTA TTAATAGTACAGTATCCAGTCTTTGCTTCTCTTACTTTCATTTAACTTGCTCAAGGCAAA CTAAAACCTTTCAGCACCTGCAGCTTTCACGTCAATGCCATTTCTGTTTTCTTTGAGTCA GTGGCATTCATGTATCTCAAATATTTTTCTCCAGGGTCTATGAACCAGGAGATGTTGCTT TCTGTTTTCTGTTACAATTTGAGGTCTGTGCTGAACTCCCTGTTTAAAGCCTGAGGAACA AGAAGAATGCTGGT |
| Conceptual translation |
SQLFFLFIVLSINTTCXSXVV/FVAIYNPSLHEVTMSPQVR/ERETGFAGTT/HT GHILRPTFCSIDVINHHL/DSLLVLXSCTSTCANEVVVFTVVGINSTVSSL\SLTFI XAQGKLKPFSTCSFHVNAISVFFESVAFMYLKYFSPGSMNQEMLLSVFCYNLRSVLNSL /XLRNKKNAG Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 72,960,353 | 72,960,364 | Del(12) | -/CCCGGCCTCGCA | rs58030947 (DbSNP) | |
| 11 | 72,960,492 | 72,960,499 | Del(8) | -/GAGAGAGA | rs57304893 (DbSNP) | |
| 11 | 72,960,450 | 72,960,450 | SNP | C/T | rs59268601 (DbSNP) | |
| 11 | 72,960,458 | 72,960,458 | SNP | C/T | rs60779105 (DbSNP) | |
| 11 | 100 | -100 | SNP | C/G | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 72,960,260 | 72,962,913 | Deletion | #299 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR8R1P.aApr07-unspliced | main_exon | CDS_partial | chr11 | 73,249,537 | 73,249,868 | + |
| 3UTR | chr11 | 73,249,868 | 73,249,916 | + | ||