OR9A1P Olfactory Receptor
| Gene Symbol | OR9A1P1 (View this gene in GeneCards) |
| Family | 9 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HSHTPCRX06, HsOR7.5.2P, ORL41, ORL3191 |
| External Ids | HGNC: 8486 GeneBank: AB065690, HSHTPRX06, NG_002195 ORDB: ORL41, ORL3191 |
| Build #39 labels | OR9A1P |
| Chromosomal location | 7:141,887,148-141,888,089 (+) |
| Cluster | 7@142 |
| Synteny | CLIC#14 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR9A3P | 87.13% | 303 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR9A7 | 81% | 314 |
| Mouse | Or9a7 | 78% | 314 |
| Rat | Or9a7-ps | 78% | 314 |
| Cow | OR9A7 | 78% | 314 |
| Orang | OR9A3P | 86% | 314 |
| Horse | OR9A2 | 77% | 314 |
| Chimp | OR9A3P | 88% | 313 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | GD261227 |
| mRNA | X64982 |
Sequence information
| Nucleotide sequence |
ATGTTGGGGAATTACTCTAGCGCCACTGAATTTTTTCTCTTAGGCTTCCCTGGCTCCCAA GAAGTATGCCGTATCCTATTTGCGACCTTCTTCCTCTTGTATGCAGTGACAGTGATGGGA AACGTGGTCATCATCATCACTGTCTGTGTTGATAAATGTCTGCAGTCCCCCATTTATTTT TTCCTGGGCCACCTCTGTGTCCTGGAGATCCTGATCACATCCACCGCTGTCCCTTTTATG CTCTGGGGGTTGCTGCTTCCAAGCACCCAGATCATGTCTTTGACAGCCTGTGCTGCACAG CTATATTTATACCTTTCTTTGGGTACCTTGGAGTTGGCATTAATGGGAGTGATGGCTGTG GACCGTTATGTGGCTGTGTGTAACCCTTTGAGGTACAACATCATTATGAACAGCAGCACC TTCATTTGGGTGATAATTGTGTCATGGGTTTTGGGGTTTCTTTCTGAAATCTGGCCAGTT TATGCCACTTTTCAGCTTACTTTCTGCAAATCAAGTGTGTTAGATCATTTTTATTGTGAC CGAGGACAATTGCTCAAGGTATCCTGTGAGGACACTCTTTTCAGAGAGTTTATTCTTTTT CTAATGGCTGTTTTCATTATCATTGGTTCTTTGATCCCTACGATTGTCTCCTACACCTAC ATCATCTCCACCAACCTCAAGATTCCGTCAGCCTCTGGCTGGAGGAAATCCTTTTCCACC TGTGCCTCCCACTTCACCTATGTTGTGATTGGCTATGGCAGCTGCTTGTTTCTCTACGTG AAACCCAAGTAAACGCAGGCAGCCGAGTATAACAGGGTAGTGTCACTGCTGGTTTTAGTG GTGACCCCTTTTCTGAACCCTTTTATCTTCACCCTGAGGAATGACAAATTCATACAGGCC TTTGGAGATGGCATGAAACACTGCTATAAACTCCTTAAAAAT |
| Conceptual translation |
MLGNYSSATEFFLLGFPGSQEVCRILFATFFLLYAVTVMGNVVIIITVCVDKCLQSPIYF FLGHLCVLEILITSTAVPFMLWGLLLPSTQIMSLTACAAQLYLYLSLGTLELALMGVMAV DRYVAVCNPLRYNIIMNSSTFIWVIIVSWVLGFLSEIWPVYATFQLTFCKSSVLDHFYCD RGQLLKVSCEDTLFREFILFLMAVFIIIGSLIPTIVSYTYIISTNLKIPSASGWRKSFST CASHFTYVVIGYGSCLFLYVKPKXQAAEYNRVVSLLVLVVTPFLNPFIFTLRNDKFIQA FGDGMKHCYKLLKN Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 7 | 100 | -100 | SNP | T/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) | |
| 7 | 141,587,056 | 141,587,056 | SNP | A/C | rs61732455 (DbSNP) | |
| 7 | 141,587,083 | 141,587,083 | SNP | G/A | rs2463252 (DbSNP) | |
| 7 | 141,587,104 | 141,587,104 | SNP | T/C | rs2463251 (DbSNP) | |
| 7 | 141,587,105 | 141,587,105 | SNP | G/A | rs2463250 (DbSNP) | |
| 7 | 141,587,135 | 141,587,135 | SNP | A/G | rs60819741 (DbSNP) | |
| 7 | 141,587,214 | 141,587,214 | SNP | C/T | rs61732454 (DbSNP) | |
| 7 | 141,587,221 | 141,587,221 | SNP | A/G | rs61732453 (DbSNP) | |
| 7 | 141,587,276 | 141,587,276 | SNP | C/T | rs2471742 (DbSNP) | |
| 7 | 141,587,308 | 141,587,308 | SNP | A/G | rs12667802 (DbSNP) | |
| 7 | 141,587,312 | 141,587,312 | SNP | A/G | rs2471743 (DbSNP) | |
| 7 | 141,587,621 | 141,587,621 | SNP | A/T | rs61732451 (DbSNP) | |
| 7 | 141,587,724 | 141,587,724 | SNP | A/C | rs61732450 (DbSNP) | |
| 7 | 141,587,756 | 141,587,756 | SNP | A/G | rs73525284 (DbSNP) | |
| 7 | 141,587,867 | 141,587,867 | SNP | A/G | rs73525285 (DbSNP) | |
| 7 | 141,887,956 | 141,887,956 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 7 | 141,888,067 | 141,888,067 | SNP | A/G | 1000GP (CHBJPT) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR9A1P.aApr07-unspliced | main_exon | CDS_partial | chr7 | 141,887,522 | 141,887,864 | + |