OR9A2 Olfactory Receptor
| Gene Symbol | OR9A21 (View this gene in GeneCards) |
| Family | 9 |
| Subfamily | A |
| Pseudogene | No |
| CORP pseudogene probability score | |
| Aliases | OR7-2, HsOR7.6.1P, ORL3173 |
| External Ids | HGNC: 15093 GeneBank: AB065696, AB065874, AY284261-AY284292, BK004391, NM_001001658 ORDB: ORL3173 |
| Build #39 labels | OR9A2 |
| Chromosomal location | 7:143,026,203-143,027,132 (-) |
| Cluster | 7@143a |
| Synteny | CLIC#15 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR9A1P | 74.29% | 315 |
| OR9A3P | 74.67% | 300 |
| OR9A4 | 78.34% | 314 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR9A4 | 79% | 315 |
| Mouse | Or9a2 | 80% | 315 |
| Rat | Or9a4 | 76% | 315 |
| Cow | OR9A16 | 79% | 317 |
| Orang | OR9A1P | 76% | 315 |
| Horse | OR9A4D | 83% | 310 |
| Chimp | OR9A2P | 93% | 311 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | EG357679 |
| mRNA | BC137049 |
| GNF Atlas2 | gnf1h10924_at |
Sequence information
| Nucleotide sequence |
ATGATGGACAACCACTCTAGTGCCACTGAATTCCACCTTCTAGGCTTCCCTGGGTCCCAA GGACTACACCACATTCTTTTTGCTATATTCTTTTTCTTCTATTTAGTGACATTAATGGGA AACACGGTCATCATTGTGATTGTCTGTGTGGATAAACGTCTGCAGTCCCCCATGTATTTC TTCCTCAGCCACCTCTCTACCCTGGAGATCCTGGTCACAACCATAATTGTCCCCATGATG CTTTGGGGATTGCTCTTCCTGGGATGCAGACAGTATCTTTCTCTACATGTATCGCTCAAC TTTTCCTGTGGGACCATGGAGTTTGCATTACTTGGAGTGATGGCTGTGGACCGTTATGTG GCTGTGTGTAACCCTTTGAGGTACAACATCATTATGAACAGCAGTACCTGTATTTGGGTG GTAATAGTGTCATGGGTGTTTGGATTTCTTTCTGAAATCTGGCCCATCTATGCCACATTT CAGTTTACCTTCCGCAAATCAAATTCATTAGACCATTTTTACTGTGACCGAGGGCAATTG CTCAAACTGTCCTGCGATAACACTCTTCTCACAGAGTTTATCCTTTTCTTAATGGCTGTT TTTATTCTCATTGGTTCTTTGATCCCTACGATTGTCTCCTACACCTACATTATCTCCACC ATCCTCAAGATCCCGTCAGCCTCTGGCCGGAGGAAAGCCTTCTCCACTTTTGCCTCCCAC TTCACCTGTGTTGTGATTGGCTATGGCAGCTGCTTGTTTCTCTACGTGAAACCCAAGCAA ACACAGGGAGTTGAGTACAATAAGATAGTTTCCCTGTTGGTTTCTGTGTTAACCCCCTTC CTGAATCCTTTCATCTTTACTCTTCGGAATGACAAAGTCAAAGAGGCCCTCCGAGATGGG ATGAAACGCTGCTGTCAACTCCTGAAAGAT |
| Conceptual translation |
MMDNHSSATEFHLLGFPGSQGLHHILFAIFFFFYLVTLMGNTVIIVIVCVDKRLQSPMYF FLSHLSTLEILVTTIIVPMMLWGLLFLGCRQYLSLHVSLNFSCGTMEFALLGVMAVDRYV AVCNPLRYNIIMNSSTCIWVVIVSWVFGFLSEIWPIYATFQFTFRKSNSLDHFYCDRGQL LKLSCDNTLLTEFILFLMAVFILIGSLIPTIVSYTYIISTILKIPSASGRRKAFSTFASH FTCVVIGYGSCLFLYVKPKQTQGVEYNKIVSLLVSVLTPFLNPFIFTLRNDKVKEALRDG MKRCCQLLKD Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 7 | 100 | -100 | NS | C/T | R/Q | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
| 7 | 100 | -100 | SYN | A/C | L/L | 1000GP (YRI) |
| 7 | 142,723,695 | 142,723,695 | NS | A/C | C/W | rs35155408 (DbSNP) |
| 7 | 142,724,062 | 142,724,062 | NS | C/T | R/H | rs9885986 (DbSNP) |
| 7 | 142,724,142 | 142,724,142 | SYN | A/C | L/L | rs60968042 (DbSNP) |
| 7 | 142,724,195 | 142,724,195 | NS | C/T | A/T | rs34203442 (DbSNP) |
| 7 | 143,026,975 | 143,026,975 | NS | C/T | R/H | 1000GP (CEU, CHBJPT) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| R298Q | S239P | R165C | R53H | I29V | % Freq | CORP | |
|---|---|---|---|---|---|---|---|
| 1 | R | S | R | R | I | 90.78 | 0.999 |
| 2 | R | S | R | H | I | 8.14 | 0.999 |
| 3 | Q | S | R | R | I | 0.54 | 0.999 |
| 4 | R | P | R | R | I | 0.31 | 0.991 |
| 5 | R | S | C | R | I | 0.15 | 0.999 |
| 6 | R | S | R | R | V | 0.08 | 0.999 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR9A2.aApr07-unspliced | main_exon | 3UTR | chr7 | 143,025,463 | 143,026,203 | - |
| CDS | chr7 | 143,026,203 | 143,027,132 | - | ||
| 5UTR | chr7 | 143,027,132 | 143,027,152 | - | ||