OR9A3P Olfactory Receptor
| Gene Symbol | OR9A3P1 (View this gene in GeneCards) |
| Family | 9 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR7.5.1P, ORL3197 |
| External Ids | HGNC: 15094 GeneBank: AF399476, NG_004372 ORDB: ORL3197 |
| Build #39 labels | OR9A3P, OR9A6P |
| Chromosomal location | 7:141,862,860-141,863,819 (+) |
| Cluster | 7@142 |
| Synteny | CLIC#14 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR9A1P | 87.13% | 303 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR9A7 | 79% | 306 |
| Mouse | Or9a7 | 76% | 309 |
| Rat | Or9a7-ps | 76% | 309 |
| Cow | OR9A7 | 78% | 302 |
| Orang | OR9A1P | 86% | 306 |
| Horse | OR9A2 | 75% | 306 |
| Chimp | OR9A1P | 87% | 306 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | BF380735 |
Sequence information
| Nucleotide sequence |
ATGTTGGGGAATTACTCTAGCGCCACTGAATTTTTTCTCTTAGGCTTCCCTGGCTCCCAA GAAGTACGCCGTATCCTTTTTGTGAACTTCTTCTTCTTGTACGCAGTGACAGTGATGGGA AACACGGTCATCATCGTCACTGTCTGTGTTGATAAACATCTGCAGTCCCCCATGTATTTT TTCCTGGGCCACCTCTGTGTCCTGGAGATCCTGATCACATCCACCGCTGCCCCTTTTATG CTGGGGGGTTGCTGCTTCCAAGCACCCAGATCATGTCTTTGACAGCCTGTGCTGCACAGC TATATACCTTTCTTTGGGTACCTCGGAGTTGGCATTAATGGGAGTGATGGCTGTGGACCA TTATGTGGCTGTGTGTAACCCTTTGAGGTACAACATCATTATGAACAGCAGCACATGTGT CTGGATGGTCATTGTATCATGGGTGTTTGGGTTCCTTTTTCAAATCTGGCCAGTTTATGC CACTTTTCAGCTTACTTTCTGCAAATCAAATGTGTTAGATCATTTTTACTGTGACTGAGG ACAATTGCTCAAGGTATCCTGTGAGGACACTCTTTTCACAGAGTTTATTCTTTTTCTAAT GGCTGTTTTCATTATCATTGGTTCTTTTGATCCCTACGATTGTCTCCTACACCTACATCA TCTCCACCATCCTCAAGATCCCGTTAGCCTCTGGCTGGAGGAAATCCTTTTCCACTTGTG CCTCCCACTTCACCTGTGTTGTGATCGGCTACAGCAGCTGCTTGTTTCTCTACACGAAAC CCAAGCAAACACAGGCAGCCAAGTATAACCGGATAGCGTCACTGCTGGTTTTAGTGGTGA CCCCTTTTCTGAACCCTTTCATCTTCACCCTGAGGAATGACAAATTCATACAGGCCTTTG GAGATGGCATGAAACACTGCTATCAACTCCTCAGAATTTAGCTCTGTCCTGGGGACAATC |
| Conceptual translation |
MLGNYSSATEFFLLGFPGSQEVRRILFVNFFFLYAVTVMGNTVIIVTVCVDKHLQSPMYF FLGHLCVLEILITSTAAPFML/GLLLPSTQIMSLT/LCCTAIYLSLGTSELALMGVMA VDHYVAVCNPLRYNIIMNSSTCVWMVIVSWVFGFLFQIWPVYATFQLTFCKSNVLDHFYC DXQLLKVSCEDTLFTEFILFLMAVFIIIGS\IPTIVSYTYIISTILKIPLASGWRKSF STCASHFTCVVIGYSSCLFLYTKPKQTQAAKYNRIASLLVLVVTPFLNPFIFTLRNDKFI QAFG\AXTAINSSEFSSVLGTI Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 7 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI) | |
| 7 | 141,562,680 | 141,562,680 | SNP | C/T | rs7792860 (DbSNP) | |
| 7 | 141,562,726 | 141,562,726 | SNP | C/T | rs16882454 (DbSNP) | |
| 7 | 141,562,817 | 141,562,817 | SNP | G/A | rs55709813 (DbSNP) | |
| 7 | 141,563,416 | 141,563,416 | SNP | A/G | rs73738287 (DbSNP) | |
| 7 | 141,862,961 | 141,862,961 | SNP | C/T | 1000GP (CHBJPT) | |
| 7 | 141,863,579 | 141,863,579 | SNP | G/T | 1000GP (CHBJPT) | |
| 7 | 141,863,634 | 141,863,634 | SNP | C/T | 1000GP (CHBJPT) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR9A3P.aApr07-unspliced | main_exon | CDS_partial | chr7 | 141,863,100 | 141,863,562 | + |