OR9G1 Olfactory Receptor
Gene Symbol | OR9G11 (View this gene in GeneCards) |
Family | 9 |
Subfamily | G |
Pseudogene | No |
CORP pseudogene probability score | |
Aliases | OR11-210, OR11-114, HsOR11.11.87, ORL3449 |
External Ids | HGNC: 15319 GeneBank: AB065500, BK004511, NM_001005213 ORDB: ORL3449 |
Build #39 labels | OR9G1, OR9G5 |
Chromosomal location | 11:56,700,388-56,701,302 (+) |
Cluster | 11@56 |
Synteny | CLIC#26 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR9G3P | 77.15% | 302 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR9G1B | 84% | 304 |
Mouse | Or9g8 | 77% | 303 |
Rat | Or9g20 | 77% | 304 |
Cow | OR9G3 | 77% | 303 |
Orang | OR9G2P | 59% | 306 |
Horse | OR9G3 | 76% | 303 |
Chimp | OR9G1C | 95% | 305 |
Expression evidences
Source | Accession |
---|---|
mRNA | AB463984 |
Sequence information
Nucleotide sequence |
ATGCAGAGGAGCAATCATACAGTGACTGAGTTTATACTGCTGGGCTTCACCACAGACCCA GGAATGCAGCTGGGCCTCTTCGTGGTGTTCCTGGGCGTGTACTCTCTCACTGTGGTAGGA AATAGCACCCTCATCGTGTTGATCTGTAATGACTCCTGCCTCCACACACCCATGTATTTT TTCACTGGAAATCTGTCGTTTCTGGATCTCTGGTATTCTTCTGTCTACACCCCAAAGATC CTAGTGACCTGCATCTCTGAAGACAAAAGCATCTCCTTTGCTGGCTGCCTGTGTCAGTTC TTCTTCTCTGCAGGGCTGGCCTATAGTGAGTGCTACCTGCTGGCTGCCGTGGCTTATGAC CGCTACGTGGCCATCTCCAAGCCCCTGCTTTATGCCCAGGCCATGTCCATAAAGCTGTGT GCATTGCTGGTAGCAGTCTCATATTGTGGTGGCTTTATTAACTCTTCAATCATCACCAAG AAAACGTTTTCCTTTAACTTCTGCCGTGAAAACATCATTGATGACTTTTTCTGTGATTTG CTTCCCTTGGTGGAGCTGGCCTGTGGCGAGAAGGGCGGCTATAAAATTATGATGTACTTC CTGCTGGCCTCCAATGTCATCTGCCCCGCAGTGCTCATCCTGGCCTCCTACCTCTTTATC ATCACCAGTGTCTTGAGGATCTCCTCCTCCAAGGGCTACCTCAAAGCCTTCTCCACATGC TCCTCCCACCTGACCTCTGTCACTTTATACTATGGCTCCATTCTCTACATCTACGCTCTC CCCAGATCTAGCTATTCTTTTGATATGGACAAAATAGTTTCTACATTTTACACTGTGGTA TTCCCCATGTTGAATCTCATGATCTACAGCCTAAGGAATAAGGATGTGAAAGAGGCTCTG AAAAAACTTCTCCCA |
Conceptual translation |
MQRSNHTVTEFILLGFTTDPGMQLGLFVVFLGVYSLTVVGNSTLIVLICNDSCLHTPMYF FTGNLSFLDLWYSSVYTPKILVTCISEDKSISFAGCLCQFFFSAGLAYSECYLLAAVAYD RYVAISKPLLYAQAMSIKLCALLVAVSYCGGFINSSIITKKTFSFNFCRENIIDDFFCDL LPLVELACGEKGGYKIMMYFLLASNVICPAVLILASYLFIITSVLRISSSKGYLKAFSTC SSHLTSVTLYYGSILYIYALPRSSYSFDMDKIVSTFYTVVFPMLNLMIYSLRNKDVKEAL KKLLP Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 56,468,047 | 56,468,048 | mnp | AC/GT | rs71458233 (DbSNP) | |
11 | 56,468,560 | 56,468,561 | mnp | CG/TA | rs34261633 (DbSNP) | |
11 | 56,468,554 | 56,468,554 | NS | A/C | K/Q | rs12420076 (DbSNP) |
11 | 56,468,416 | 56,468,416 | NS | A/G | K/E | rs11228735 (DbSNP) |
11 | 56,468,561 | 56,468,561 | NS | A/G | Y/C | rs10896517 (DbSNP) |
11 | 56,468,198 | 56,468,198 | NS | A/G | Y/C | rs4990194 (DbSNP) |
11 | 56,468,047 | 56,468,047 | NS | A/G | T/A | rs2865519 (DbSNP) |
11 | 56,468,720 | 56,468,720 | NS | C/T | P/L | rs66943455 (DbSNP) |
11 | 56,468,048 | 56,468,048 | NS | C/T | T/I | rs2865520 (DbSNP) |
11 | 56,468,089 | 56,468,089 | NS | C/T | H/Y | rs62619921 (DbSNP) |
11 | 56,468,560 | 56,468,560 | NS | C/T | H/Y | rs10896516 (DbSNP) |
11 | 56,468,368 | 56,468,368 | NS | C/T | R/C | rs11228733 (DbSNP) |
11 | 56,468,212 | 56,468,212 | NS | G/A | V/M | rs591369 (DbSNP) |
11 | 56,468,021 | 56,468,021 | NS | G/A | C/Y | rs532635 (DbSNP) |
11 | 56,468,044 | 56,468,044 | NS | G/T | V/F | rs3975155 (DbSNP) |
11 | 56,467,945 | 56,467,945 | NS | G/T | V/L | rs36184181 (DbSNP) |
11 | 56,468,440 | 56,468,440 | NS | G/T | G/C | rs12421330 (DbSNP) |
11 | 56,468,638 | 56,468,638 | NS | G/T | A/S | rs7121276 (DbSNP) |
11 | 56,468,155 | 56,468,155 | NS | G/T | G/C | rs11228732 (DbSNP) |
11 | 56,468,111 | 56,468,111 | NS | T/C | I/T | rs602224 (DbSNP) |
11 | 56,468,020 | 56,468,020 | NS | T/C | C/R | rs532637 (DbSNP) |
11 | 56,468,403 | 56,468,403 | SYN | A/G | L/L | rs11228734 (DbSNP) |
11 | 56,468,202 | 56,468,202 | SYN | A/G | L/L | rs4990196 (DbSNP) |
11 | 56,468,493 | 56,468,493 | SYN | A/G | A/A | rs10792053 (DbSNP) |
11 | 56,468,259 | 56,468,259 | SYN | C/T | A/A | rs503776 (DbSNP) |
11 | 56,468,200 | 56,468,200 | SYN | C/T | L/L | rs4990195 (DbSNP) |
11 | 56,467,881 | 56,467,881 | SYN | C/T | H/H | rs73474900 (DbSNP) |
11 | 56,467,926 | 56,467,926 | SYN | G/A | G/G | rs1704284 (DbSNP) |
11 | 56,701,017 | 56,701,017 | SYN | A/G | A/A | 1000GP (CEU) |
11 | 56,700,571 | 56,700,571 | NS | A/G | T/A | 1000GP (CEU, CHBJPT) |
11 | 56,700,722 | 56,700,722 | NS | A/G | Y/C | 1000GP (CEU, CHBJPT) |
11 | 56,700,450 | 56,700,450 | SYN | A/G | G/G | 1000GP (CEU) |
11 | 56,700,940 | 56,700,940 | NS | G/A | E/K | 1000GP (CEU) |
11 | 56,701,228 | 56,701,228 | NS | T/C | F/L | 1000GP (CEU, CHBJPT) |
11 | 56,700,724 | 56,700,724 | SYN | C/T | L/L | 1000GP (CEU, CHBJPT) |
11 | 56,700,726 | 56,700,726 | SYN | G/A | L/L | 1000GP (CEU, CHBJPT) |
11 | 56,700,736 | 56,700,736 | NS | G/A | V/M | 1000GP (CEU, CHBJPT) |
11 | 56,700,544 | 56,700,544 | NS | T/C | C/R | 1000GP (CEU, CHBJPT) |
11 | 56,700,568 | 56,700,568 | NS | T/G | F/V | 1000GP (CEU, CHBJPT) |
11 | 56,700,545 | 56,700,545 | NS | G/A | C/Y | 1000GP (CEU, CHBJPT) |
11 | 56,701,218 | 56,701,218 | SYN | C/T | Y/Y | 1000GP (CEU, CHBJPT) |
11 | 56,700,679 | 56,700,679 | NS | T/G | C/G | 1000GP (CHBJPT) |
11 | 56,701,161 | 56,701,161 | SYN | C/T | Y/Y | 1000GP (CHBJPT) |
11 | 56,701,223 | 56,701,223 | NS | T/A | V/E | 1000GP (CHBJPT) |
11 | 56,701,244 | 56,701,244 | NS | T/C | L/P | 1000GP (CHBJPT) |
11 | 100 | -100 | NS | T/C | C/R | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
11 | 100 | -100 | SYN | A/G | A/A | 1000GP (YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 56,460,050 | 56,475,898 | CopyNumber | Variation_34985 (DGV) |
11 | 56,460,779 | 56,473,586 | CopyNumber | Variation_34986 (DGV) |
11 | 56,467,760 | 56,508,007 | CopyNumber | Variation_61151 (DGV) |
Deletion | 259 (Hasin) | |||
11 | 56,467,764 | 56,470,778 | CopyNumber | #172 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
I12V | F61V | T62A | T62I | L212F | A259S | V279E | F281L | % Freq | CORP | |
---|---|---|---|---|---|---|---|---|---|---|
1 | I | V | A | I | L | A | V | F | 37.40 | 0.982 |
2 | I | V | A | I | L | A | E | L | 20.43 | 0.982 |
3 | I | F | T | I | L | A | V | F | 20.35 | 0.937 |
4 | I | F | T | I | L | A | E | L | 12.06 | 0.937 |
5 | I | F | T | I | L | S | V | F | 4.61 | 0.937 |
6 | I | F | T | I | L | S | E | L | 2.46 | 0.937 |
7 | I | V | A | I | L | S | E | L | 0.46 | 0.982 |
8 | I | V | A | I | L | A | E | F | 0.38 | 0.982 |
9 | I | V | A | I | L | S | V | F | 0.38 | 0.982 |
10 | I | V | A | I | F | A | V | F | 0.31 | 0.982 |
11 | V | F | T | I | L | A | E | L | 0.23 | 0.937 |
12 | V | F | T | I | L | A | V | F | 0.15 | 0.937 |
13 | I | F | T | I | F | A | V | F | 0.15 | 0.937 |
14 | I | F | T | I | L | A | E | F | 0.15 | 0.937 |
15 | I | V | A | I | F | A | E | L | 0.08 | 0.982 |
16 | I | F | T | I | L | A | V | L | 0.08 | 0.937 |
17 | I | F | T | I | F | A | E | L | 0.08 | 0.937 |
18 | I | F | T | I | F | S | V | F | 0.08 | 0.937 |
19 | V | F | T | I | L | S | E | L | 0.08 | 0.937 |
20 | I | F | T | I | L | S | E | F | 0.08 | 0.937 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR9G1.aApr07-unspliced | main_exon | CDS | chr11 | 56,700,388 | 56,701,302 | + |
3UTR | chr11 | 56,701,302 | 56,701,305 | + |