OR9G3P Olfactory Receptor
| Gene Symbol | OR9G3P1 (View this gene in GeneCards) |
| Family | 9 |
| Subfamily | G |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-215, OR11-202, HsOR11.11.88P, ORL3566 |
| External Ids | HGNC: 15321 GeneBank: BK004512, BK004599, NG_004179 ORDB: ORL3566 |
| Build #39 labels | OR9G3P |
| Chromosomal location | 11:56,740,179-56,741,092 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR9G1 | 77.15% | 302 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR9G3 | 84% | 302 |
| Mouse | Or9g3 | 83% | 307 |
| Rat | Or9g3 | 83% | 307 |
| Cow | OR9G3 | 82% | 302 |
| Orang | OR9G2P | 58% | 303 |
| Horse | OR9G3 | 80% | 305 |
| Chimp | OR9G1 | 77% | 302 |
Sequence information
| Nucleotide sequence |
ATGCAGAGGAGCAATCACACAGTGACTGAGTTCATCCTGCTGGGCTTCACCACAGATCCA GGGATGCAACTGGGCCTCTTTGTGGTGTTCCTGGGTGTGTACTGTCTGACTGTGGTAGGA AGTAGCACCCTCATCGTGTTGATCTGTAATGACTCCCACCTACACACACCCATGTATTTT GTCATTGGAAATCTGTCATTTCTGGATCTCTGGTATTCTTCTGTCTACACCCCAAAGATC CTAGTGACCTGCATCTCTGAAGACAAAAGCATCTCCTTTGCTGGCTGCCTGTGTCAGTTC TTCTCTGCCAGGCTGGCCTATAGTGAGTGCTACCTACTGGCTGCCATGGCTTATGACCAC TACGTGGCCATCTCCAAGCCCCTGCTTTATGCTCAGACCATGCCAAGGAGATTGTGCATC TGTTTGGTTTTATATTCCTATACTGGGGGTTTTGTCAATGCAATAATATTAACCAGCAAC ACATTCACATTGGATTTTTGTGGTGACAATGTCATTGATGACTTTTTCTGTGATGTCCCA CCCCTCGTGAAGCTGGCATGCAGTGTGAGAGCTACCAGGCTGTGCTGCACTTCCTTCTGG CCTCCAATGTCATCTCCCCTACTGTGCTCATCCTTGCCTCTTACCTCTCCATCATCACCA CCATCCTGAGGATCCACTCTACCCAGGGCCGCATCAAAGTCTTCTCCACATGCTCCTCCC ACCTGATCTCCGTTACCTTATACTATGGCTCCATTCTCTACAACTACTCCCGGCCAAGTT CCAGCTACTCCCTCAAGAGGGACAAAATGGTTTCTACCTTTTATACTATGCTGTTCCCCA TGTTGAATCCCATGATCTACAGTCTGAGGAATAAAGACATGAAAGACGCTCTGAAAAAAT TCTTCAAGTCAGCA |
| Conceptual translation |
MQRSNHTVTEFILLGFTTDPGMQLGLFVVFLGVYCLTVVGSSTLIVLICNDSHLHTPMYF VIGNLSFLDLWYSSVYTPKILVTCISEDKSISFAGCLCQFFSARLAYSECYLLAAMAYDH YVAISKPLLYAQTMPRRLCIWLVLYSYTGGFVNAIILTSNTFTLDFCGDNVIDDFFCDVP PLVKLACSVRATRL/LHFLLASNVISPTVLILASYLSIITTILRIHSTQGRIKVFSTCS SHLISVTLYYGSILYNYSRPSSSYSLKRDKMVSTFYTMLFPMLNPMIYSLRNKDMKDALK KFFKSA Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 56,508,221 | 56,508,220 | Ins(4) | -/GAGA | rs35153452 (DbSNP) | |
| 11 | 56,508,226 | 56,508,225 | rescued_Ins(4) | -/AGAG | rs61678513 (DbSNP) | |
| 11 | 56,508,227 | 56,508,226 | rescued_Ins(4) | -/AGAG | rs67339930 (DbSNP) | |
| 11 | 56,508,222 | 56,508,221 | rescued_Ins(4) | -/GAGA | rs67703495 (DbSNP) | |
| 11 | 56,508,226 | 56,508,226 | SNP | A/C | rs56391658 (DbSNP) | |
| 11 | 56,508,032 | 56,508,032 | SNP | A/G | rs11228757 (DbSNP) | |
| 11 | 56,507,716 | 56,507,716 | SNP | A/G | rs61741400 (DbSNP) | |
| 11 | 56,508,386 | 56,508,386 | SNP | A/G | rs61742386 (DbSNP) | |
| 11 | 56,508,390 | 56,508,390 | SNP | C/T | rs61742387 (DbSNP) | |
| 11 | 56,508,476 | 56,508,476 | SNP | C/T | rs11228758 (DbSNP) | |
| 11 | 56,508,191 | 56,508,191 | SNP | C/T | rs645359 (DbSNP) | |
| 11 | 56,507,880 | 56,507,880 | SNP | C/T | rs644039 (DbSNP) | |
| 11 | 56,508,541 | 56,508,541 | SNP | C/T | rs11228759 (DbSNP) | |
| 11 | 56,508,525 | 56,508,525 | SNP | G/A | rs556056 (DbSNP) | |
| 11 | 56,507,812 | 56,507,812 | SNP | G/A | rs473032 (DbSNP) | |
| 11 | 56,740,336 | 56,740,336 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 56,740,340 | 56,740,340 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 11 | 56,740,362 | 56,740,362 | SNP | A/G | 1000GP (CEU) | |
| 11 | 56,740,376 | 56,740,376 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 56,740,510 | 56,740,510 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 56,740,512 | 56,740,512 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 56,740,537 | 56,740,537 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 56,740,556 | 56,740,556 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 56,740,715 | 56,740,715 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 56,741,000 | 56,741,000 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 56,741,049 | 56,741,049 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 56,741,065 | 56,741,065 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 56,740,211 | 56,740,211 | SNP | C/T | 1000GP (CHBJPT) | |
| 11 | 56,740,214 | 56,740,214 | SNP | C/A | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 56,467,760 | 56,508,007 | CopyNumber | Variation_61151 (DGV) |
| CopyNumber | 102 (Hasin) | |||
| 11 | 56,507,555 | 56,510,568 | CopyNumber | #69 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.