OR9I1 Olfactory Receptor
| Gene Symbol | OR9I11 (View this gene in GeneCards) |
| Family | 9 |
| Subfamily | I |
| Pseudogene | No |
| CORP pseudogene probability score | 0.06 (functional) |
| Aliases | OR11-228, HsOR11.12.5, ORL3367 |
| External Ids | HGNC: 14718 GeneBank: AB065733, AF399531, BK004292, NM_001005211 ORDB: ORL3367 |
| Build #39 labels | OR9I1 |
| Chromosomal location | 11:58,118,503-58,119,444 (-) |
| Cluster | 11@58 |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR9I3P | 70.55% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR9I2 | 64% | 311 |
| Mouse | Or9i1b | 82% | 314 |
| Mouse | Or9i1 | 83% | 311 |
| Rat | Or9i1b | 82% | 314 |
| Rat | Or9i1-ps | 80% | 310 |
| Cow | OR9I17 | 81% | 314 |
| Orang | OR9I1P | 94% | 314 |
| Horse | OR9I1E | 84% | 314 |
| Horse | OR9I1C | 84% | 309 |
| Horse | OR9I1D | 83% | 307 |
| Chimp | OR9I3P | 70% | 309 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10939_at |
Sequence information
| Nucleotide sequence |
ATGGCCAAGAATAATCTCACCAGAGTAACCGAATTCATTCTCATGGGCTTTATGGACCAC CCCAAATTGGAGATTCCCCTCTTTCTGGTGTTTCTGAGTTTCTACCTAGTCACCCTTCTT GGGAATGTGGGGATGATTATGTTAATCCAAGTAGATGTCAAACTCTACACCCCAATGTAC TTCTTCCTGAGCCACCTCTCCCTGCTGGATGCCTGTTACACCTCAGTCATCACCCCTCAG ATCCTAGCCACATTGGCCACAGGCAAAACGGTCATCTCCTACGGCCACTGTGCTGCCCAG TTCTTTTTATTCACCATCTGTGCAGGCACAGAGTGCTTTCTGCTGGCAGTGATGGCCTAT GATCGCTATGCTGCCATTCGCAACCCACTGCTCTATACCGTGGCCATGAATCCCAGGCTC TGCTGGAGCCTGGTGGTAGGAGCCTATGTCTGTGGGGTGTCAGGAGCCATCCTGCGTACC ACTTGCACCTTCACCCTCTCCTTCTGTAAGGACAATCAAATAAACTTCTTCTTCTGTGAC CTCCCACCCCTGCTGAAGCTTGCCTGCAGTGACACAGCAAACATCGAGATTGTCATCATC TTCTTTGGCAATTTTGTGATTTTGGCCAATGCCTCCGTCATCCTGATTTCCTATCTGCTC ATCATCAAGACCATTTTGAAAGTGAAGTCTTCAGGTGGCAGGGCCAAGACTTTCTCCACA TGTGCCTCTCACATCACTGCTGTGGCCCTTTTCTTTGGAGCCCTTATCTTCATGTATCTG CAAAGTGGCTCAGGCAAATCTCTGGAGGAAGACAAAGTCGTGTCTGTCTTCTATACAGTG GTCATCCCCATGCTGAACCCTCTGATCTACAGCTTAAGAAACAAAGATGTAAAAGACGCC TTCAGAAAGGTCGCTAGGAGACTCCAGGTGTCCCTGAGCATG |
| Conceptual translation |
MAKNNLTRVTEFILMGFMDHPKLEIPLFLVFLSFYLVTLLGNVGMIMLIQVDVKLYTPMY FFLSHLSLLDACYTSVITPQILATLATGKTVISYGHCAAQFFLFTICAGTECFLLAVMAY DRYAAIRNPLLYTVAMNPRLCWSLVVGAYVCGVSGAILRTTCTFTLSFCKDNQINFFFCD LPPLLKLACSDTANIEIVIIFFGNFVILANASVILISYLLIIKTILKVKSSGGRAKTFST CASHITAVALFFGALIFMYLQSGSGKSLEEDKVVSVFYTVVIPMLNPLIYSLRNKDVKDA FRKVARRLQVSLSM Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 57,886,331 | 57,886,331 | NS | C/T | E/K | rs59849756 (DbSNP) |
| 11 | 58,118,808 | 58,118,808 | NS | C/T | V/I | 1000GP (CEU) |
| 11 | 58,118,963 | 58,118,963 | NS | G/T | T/N | 1000GP (CHBJPT) |
| 11 | 100 | -100 | NS | G/T | Q/K | 1000GP (YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| A305T | Q261K | V213I | E196K | T161N | % Freq | CORP | |
|---|---|---|---|---|---|---|---|
| 1 | A | Q | V | E | T | 97.39 | 0.143 |
| 2 | A | Q | V | E | N | 1.61 | 0.143 |
| 3 | A | Q | I | E | T | 0.54 | 0.143 |
| 4 | A | K | V | E | T | 0.31 | 0.143 |
| 5 | A | Q | V | K | T | 0.08 | 0.143 |
| 6 | T | Q | V | E | T | 0.08 | 0.143 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR9I1.aApr07-unspliced | main_exon | 3UTR | chr11 | 58,118,500 | 58,118,503 | - |
| CDS | chr11 | 58,118,503 | 58,119,444 | - | ||