OR9I3P Olfactory Receptor
| Gene Symbol | OR9I3P1 (View this gene in GeneCards) |
| Family | 9 |
| Subfamily | I |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-225, OR11-227, HsOR11.12.4P, ORL3548 |
| External Ids | HGNC: 15325 GeneBank: AB065732, AF399370, BK004734, BK004808 ORDB: ORL3548 |
| Build #39 labels | OR9I3P |
| Chromosomal location | 11:58,108,720-58,109,661 (-) |
| Cluster | 11@58 |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR9I1 | 70.55% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR9I1 | 72% | 314 |
| Mouse | Or9i1 | 71% | 309 |
| Rat | Or9i13 | 69% | 309 |
| Cow | OR9I17 | 68% | 309 |
| Orang | OR9I1P | 69% | 309 |
| Horse | OR9I1D | 71% | 308 |
| Chimp | OR9I1 | 70% | 314 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529254 |
Sequence information
| Nucleotide sequence |
ATGGCCAAAAGAAATCTCAGCACTGTGACAGAGTTCATTCTTGTAGTCTTCACAGATCAC CCTGAACTGGCAGTTCCACTCTTCCTAGTGTTTCTCAGTTTCTATCTTGTCACTTTTCTG GGGAATGGGGGGATGATCATTCTAATCCAAGTGGATGCCCAACTCCACACCCCCGTGTAC TTCTTCCTGAGCCACCTTGCTTTCCTGGATGCCTGCTGTGCCTCAGTAATCACCCCTCAG ATTCTGGCCACACTGGCCACAGACAAGACAGTTATCTCCTATGGCTGCCGTGCTGTGCAG TTCTCTTTCTTCACCATATGTGCAGGCACAGAGTGTTACCTGCTGTCAGTGATGGCCTAT GACCGCTTTGTTGCCATTAGCAATCCACTGCACTGTAACATGACCATGACTCCAGGTACC TGCAGGGTCTTTTTGGCCAGTGCCTTCATCTGTGGGGTGTCAGGGGCCATTCTGCATACC ACGTGCACCTTCACCCTCTCCTTCTGTTGTGACAATCAGATCAACTTCTTCTTCTGTGAC CTCCCACCCCTGCTGAAGCTCGCCTGCAGCAGCATGACACAAACTGAGATTGTCATTCTC CTTTGTGCAAAATGCATGTTCCTAGCCAATGTCATGGTTATCCTGATCTGCTACATGCTC ATTATCAGAGCCATTTTGAGGGTGAAGTCGGCAGGTGGGTAAGCCAAGACCTTCTCCACC TGCACCTCCCATCTCACCACTGTTGTCCTCTTCTTTGGGACACTTGCCTTCATGTACCAG AGAAGTAACTCCGCCAAATCCTCAGAGGAAGACAAGATAGTGTCTGTCTTTTACACTGTA ATCATCCCTATGTTGAACCCCTTGATCTACAGTCTGAGGAACAAAGATGTAAAAGCTGCA TTTGGAAAACTCGTTGGTAAATTCCAATTTCCAACGAATGTA |
| Conceptual translation |
MAKRNLSTVTEFILVVFTDHPELAVPLFLVFLSFYLVTFLGNGGMIILIQVDAQLHTPVY FFLSHLAFLDACCASVITPQILATLATDKTVISYGCRAVQFSFFTICAGTECYLLSVMAY DRFVAISNPLHCNMTMTPGTCRVFLASAFICGVSGAILHTTCTFTLSFCCDNQINFFFCD LPPLLKLACSSMTQTEIVILLCAKCMFLANVMVILICYMLIIRAILRVKSAGGXKTFST CTSHLTTVVLFFGTLAFMYQRSNSAKSSEEDKIVSVFYTVIIPMLNPLIYSLRNKDVKAA FGKLVGKFQFPTNV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 57,876,765 | 57,876,765 | Del(1) | -/A | rs34718541 (DbSNP) | |
| 11 | 57,876,769 | 57,876,770 | Del(2) | -/CG | rs10607597 (DbSNP) | |
| 11 | 57,876,436 | 57,876,436 | SNP | A/C | rs7935428 (DbSNP) | |
| 11 | 57,876,442 | 57,876,442 | SNP | C/G | rs7112431 (DbSNP) | |
| 11 | 57,876,444 | 57,876,444 | SNP | T/C | rs61732261 (DbSNP) | |
| 11 | 57,876,682 | 57,876,682 | SNP | T/C | rs61738000 (DbSNP) | |
| 11 | 57,876,221 | 57,876,221 | SNP | T/C | rs1447170 (DbSNP) | |
| 11 | 57,876,962 | 57,876,962 | SNP | T/G | rs61729635 (DbSNP) | |
| 11 | 58,108,749 | 58,108,749 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 58,108,815 | 58,108,815 | SNP | G/A | 1000GP (CEU) | |
| 11 | 58,108,964 | 58,108,964 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 58,109,210 | 58,109,210 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 58,108,786 | 58,108,786 | SNP | C/G | 1000GP (CHBJPT) | |
| 11 | 58,108,795 | 58,108,795 | SNP | G/A | 1000GP (CHBJPT) | |
| 11 | 58,108,905 | 58,108,905 | SNP | C/T | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.