OR9L1P Olfactory Receptor
| Gene Symbol | OR9L1P1 (View this gene in GeneCards) |
| Family | 9 |
| Subfamily | L |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | ORL3205 |
| External Ids | HGNC: 14761 ORDB: ORL3205 |
| Build #39 labels | OR9L1P, OR9L2P |
| Chromosomal location | 11:58,077,349-58,078,605 (-) |
| Cluster | 11@58 |
| Synteny | CLIC#27 |
| Remarks | Disrupted by Line repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR9I1 | 45.28% | 318 |
| OR9I3P | 42.72% | 323 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR9I1 | 45% | 329 |
| Mouse | Or9i1b | 44% | 326 |
| Rat | Or9i1b | 47% | 310 |
| Cow | OR9I17 | 44% | 317 |
| Orang | OR9I1P | 44% | 319 |
| Horse | OR9I1 | 45% | 332 |
| Chimp | OR9I1 | 45% | 322 |
Sequence information
| Nucleotide sequence |
CAACTGAAAAGAATCTCATCTCTATGAATGGGTTTATGAACTTCACTGATTACCCAGAGT TGGAAATGCCCTTGTTCTTAGTGTTTCTCAGTTGCTTCCTGGCCATTATTTTGAGAAATA TGGAATGGGTCATTCTGACCCAAGTGAATGTGCATCTCTTCACCCTATATACTTCTTCCT AACAAATGTCACCCTTTGGGATACCTCAGTCATCATGCCTCAGATCCTGGCCATTCTGGC CACAGGCAAGACAACCATTTCCTATGGCCGCTAATAAAAGCAATGAGGTCCTTTTTCTTC ATTTGTGTAGGAACTTAGTGTTTCCTGCCAACAGCAATGACCATAAGCAGCCCACTGCCC CACACTACAAGCCATGAACTTCAAGACATGTTGGGGTTTTTTTTTGGTGGGGATTTGTTC ATGCTGGGTTTTGATGGTGAACGTGGTGAATGCCTACACCTGAGGACTATCAGGAGCCAC TTTCAACACCATCTGCACATTTGCCCGCTTCTTCTGTGATGACAATTAGATCAAATTCTG TCACATCCTGCCCCTGCTGAAGCTCATTTGAAATACTTCAGGAAACAGCAAGATAATTAT TGTGATCTTTGACAGCTTTTATGATTATAGCTGGCACTAGGGTCATCCTGATCTCTTACC TGCTAATCATCAGGGCTTTGAGGATGAAATCATCGAGTGGCAAAGCCAATAATTTTATCC ATCCACTTGTGCCTCCCACCTAACTGCTATGACCTTCCTTTGGGATCCCCATCTTCAGAC ATGTGAAGTACCTCAGATAAATCACTGACAGAAGACAAGTTGGCATCATGACTTGCACCA TCTTTATTCCTATGCTAGAACTTTTGATCCAAAGTCTAAAGAAGGATATACAAGTTGCCT TCAAAAAGGCCATAGGTAACTTCTGGGTTTTTGAGAGGCTGTA |
| Conceptual translation |
TEKNLISMNGFMNFTDYPELEMPLFLVFLSCFLAIILRNMEWVILTQVNVHLF/PIYFF LTNVTLWDTSVIMPQILAILATGKTTISYGRXKQ/RSFFFICVGTXFLPTAMTISSP LPHTT\MNFKTCWGFFLVGICTCWVLMVNVVNAYTXLSGATFNTICTFARFFCDDNX KFCHILPLLKLIXTSGNSKIIIVI\TAFMIIAGTRVILISYLLIIRALRMKSSSG/S QXYPSTCASHLTAMTFLWDPHLQTCEVPQIN/LTEDKLAS/TCTIFIPMLELLIQSL KKDIQVAFKKAIGNFWVFERL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
| 11 | 57,844,973 | 57,844,973 | SNP | A/G | rs2443423 (DbSNP) | |
| 11 | 57,845,257 | 57,845,257 | SNP | A/C | rs2513708 (DbSNP) | |
| 11 | 57,845,321 | 57,845,321 | SNP | C/T | rs12363350 (DbSNP) | |
| 11 | 57,845,443 | 57,845,443 | SNP | A/T | rs2441967 (DbSNP) | |
| 11 | 58,077,501 | 58,077,501 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 58,077,503 | 58,077,503 | SNP | A/T | 1000GP (CHBJPT) | |
| 11 | 58,077,849 | 58,077,849 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 58,077,971 | 58,077,971 | SNP | A/T | 1000GP (CEU, CHBJPT) | |
| 11 | 58,078,208 | 58,078,208 | SNP | A/C | 1000GP (CEU) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 57,842,821 | 57,846,177 | CopyNumber | #71 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.