OR9N1P Olfactory Receptor
| Gene Symbol | OR9N1P1 (View this gene in GeneCards) |
| Family | 9 |
| Subfamily | N |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | ORL3198 |
| External Ids | HGNC: 15096 GeneBank: NG_004258 ORDB: ORL3198 |
| Build #39 labels | OR9N1P |
| Chromosomal location | 7:141,911,404-141,912,024 (+) |
| Cluster | 7@142 |
| Synteny | CLIC#14 |
| Remarks | Disrupted by Line repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR9A1P | 53.59% | 153 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR9A8 | 53% | 150 |
| Mouse | Or9a2 | 52% | 151 |
| Rat | Or9a7-ps | 47% | 152 |
| Cow | OR9A2 | 50% | 153 |
| Orang | OR9A1P | 53% | 153 |
| Horse | OR9A2 | 52% | 153 |
| Chimp | OR9A1P | 51% | 153 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | AA081662 |
Sequence information
| Nucleotide sequence |
CTCATTTTTTTTTTTTTTTGGCTCTTTCCATTTCACAAGGAGCAAATCCTCAGGACTAAA TATGTGGGAGTCACAGTGGTGTTACTGAATTTTGTCTCTTAGGCTTCCCTGGCTCCCAGT AAGTATGCCATTTGTTACCTTCTTCCTTTGTCAGTGATTGTAATAAGAAATTATGTAATC ATCATAGTATGTGTTGAGAAATGCCTGCTGTTCCTCCTATATTTATTCTATGGTGACCTC TCTGTCATGGAAATCCTTATCACATATACTGCTGTTCCCTTGATGCTCAGGGGTTGTTAC TTTCCATGATTCAAACAATACCTTTAATGACATGTGCTGTCCAACTCTATATGAACTTTT TTGGGGGTACACAAAATTTGCATTACTGGGAGTGATGACTGTGAACCATTATGTGGCTCT CTGTAACTCTTTGAAGTAAAACATCATTATGAGCAGACACACTGCATCTGGCTGGTAATT GTATTATTGATTGGGTTCCTTTCTGAAATCTGGTCAGTCTATGCCACATTTCAGCTCCCT TCAAATCAACTCAAAATGAATTAAAAACTTAAATGCAAGAGCTGAAAGCTGAAACTGCCT TAAAAAGAGGGATATCTTGCC |
| Conceptual translation |
LIFFFFWLFPFHKEQILRTKYXGSHSGVTEFCLLGFPGSQXCHLL\LPLSVIVIRNY VIIIVCVEKCLLFLLYLFYGDLSVMEILITYTAVPLML/GLLLSMIQTIPLMTCAVQLY MN/FWGYTKFALLGVMTVNHYVALCNSLKXIIMSRH/CIWLVIVLLIGFLS/NLVS LCHISAPF\QLKMNXLKCKSXLKLPXEGYLA Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 7 | 100 | -100 | SNP | G/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) | |
| 7 | 141,611,208 | 141,611,208 | Del(1) | -/T | rs5888021 (DbSNP) | |
| 7 | 141,611,218 | 141,611,218 | Del(1) | -/T | rs11329728 (DbSNP) | |
| 7 | 141,611,222 | 141,611,222 | Del(1) | -/T | rs71166543 (DbSNP) | |
| 7 | 141,611,285 | 141,611,285 | SNP | C/T | rs994809 (DbSNP) | |
| 7 | 141,611,392 | 141,611,392 | SNP | A/G | rs7808421 (DbSNP) | |
| 7 | 141,611,499 | 141,611,499 | SNP | C/G | rs7789123 (DbSNP) | |
| 7 | 141,611,591 | 141,611,590 | Ins(1) | -/G | rs35753903 (DbSNP) | |
| 7 | 141,911,485 | 141,911,485 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 7 | 141,911,592 | 141,911,592 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 7 | 141,911,699 | 141,911,699 | SNP | G/C | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 7 | 141,602,319 | 141,642,997 | CopyNumber | Variation_36625 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR9N1P.aApr07-unspliced | main_exon | 5UTR | chr7 | 141,911,217 | 141,911,404 | + |
| CDS_partial | chr7 | 141,911,404 | 141,911,549 | + | ||