OR9Q2 Olfactory Receptor
| Gene Symbol | OR9Q21 (View this gene in GeneCards) |
| Family | 9 |
| Subfamily | Q |
| Pseudogene | No |
| CORP pseudogene probability score | 0.31 (functional) |
| Aliases | OR11-230, HsOR11.12.8 |
| External Ids | HGNC: 15328 GeneBank: AB065859, BK004685, NM_001005283 |
| Build #39 labels | OR9Q2P |
| Chromosomal location | 11:58,190,491-58,191,432 (+) |
| Cluster | 11@58 |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR9Q1 | 73.46% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR9Q3 | 78% | 313 |
| Mouse | Or9q2 | 86% | 314 |
| Rat | Or9q2 | 84% | 312 |
| Cow | OR9Q6 | 78% | 313 |
| Orang | OR9Q1 | 75% | 309 |
| Horse | OR9Q7P | 76% | 314 |
| Chimp | OR9Q1 | 73% | 309 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | BC140718 |
Sequence information
| Nucleotide sequence |
ATGGCTGAAAGGAATTACACCGTAGTGACGGAGTTCTTCCTTACTGCATTTACTGAACAT CTCCAGTGGAGGGTTCCTCTCTTCCTCATATTTTTGAGTTTCTATCTTGCCACTATGTTA GGGAACACAGGCATGATCCTCCTGATCCGTGGCGATCGTCGGCTCCACACCCCGATGTAC TTCTTCCTCAGCCACCTTTCCTTGGTGGACATCTGCTACTCGTCCGCCATCATCCCTCAG ATGCTGGCTGTGCTGTGGGAGCACGGCACAACCATCTCCCAGGCTCGCTGTGCAGCTCAG TTCTTCCTCTTCACCTTCTTTGCCTCCATCGACTGCTACCTTCTGGCCATCATGGCCTAT GACCGCTACACGGCCGTGTGCCAGCCCCTGCTTTATGTCACCATCATAACCGAGAAGGCC CGCTGGGGCCTAGTCACTGGGGCTTACGTTGCTGGTTTTTTCAGTGCCTTTGTTCGAACG GTCACAGCCTTCACTCTCTCCTTTTGTGGAAACAATGAGATCAACTTCATTTTCTGTGAC CTCCCTCCTCTATTAAAACTCTCCTGTGGGGACAGCTACACTCAGGAAGTGGTGATTATT GTGTTTGCTCTTTTCGTCATGCCTGCCTGTATCTTGGTGATCTTGGTATCCTACCTGTTT ATCATTGTGGCCATCCTGCAGATCCACTCTGCTGGAGGCCGGGCCAAGACCTTCTCCACC TGCGCCTCCCACCTCACTGCCGTCGCTCTTTTCTTTGGCACCCTCATCTTCATGTACCTG CGAGACAACACAGGCCAGTCCTCCGAGGGAGACCGAGTGGTGTCTGTGCTCTACACGGTG GTGACCCCAATGCTGAATCCCCTTATCTATAGCCTGAGAAACAAGGAGGTAAAAGAGGCC ACTAGGAAAGCCCTGAGCAAATCAAAGCCTGCTAGAAGACCC |
| Conceptual translation |
MAERNYTVVTEFFLTAFTEHLQWRVPLFLIFLSFYLATMLGNTGMILLIRGDRRLHTPMY FFLSHLSLVDICYSSAIIPQMLAVLWEHGTTISQARCAAQFFLFTFFASIDCYLLAIMAY DRYTAVCQPLLYVTIITEKARWGLVTGAYVAGFFSAFVRTVTAFTLSFCGNNEINFIFCD LPPLLKLSCGDSYTQEVVIIVFALFVMPACILVILVSYLFIIVAILQIHSAGGRAKTFST CASHLTAVALFFGTLIFMYLRDNTGQSSEGDRVVSVLYTVVTPMLNPLIYSLRNKEVKEA TRKALSKSKPARRP Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 57,958,497 | 57,958,497 | NS | C/T | R/C | rs34337292 (DbSNP) |
| 11 | 57,958,136 | 57,958,136 | SYN | A/G | P/P | rs61902822 (DbSNP) |
| 11 | 57,958,796 | 57,958,796 | SYN | C/T | Y/Y | rs73470064 (DbSNP) |
| 11 | 57,958,775 | 57,958,775 | SYN | C/T | D/D | rs7120468 (DbSNP) |
| 11 | 58,191,303 | 58,191,303 | SYN | C/T | D/D | 1000GP (CEU, CHBJPT) |
| 11 | 58,191,376 | 58,191,376 | NS | G/C | E/Q | 1000GP (CEU) |
| 11 | 58,191,025 | 58,191,025 | NS | T/C | C/R | 1000GP (CEU, CHBJPT) |
| 11 | 100 | -100 | SYN | G/A | T/T | 1000GP (YRI, YRI, YRI) |
| 11 | 100 | -100 | NS | T/C | C/R | 1000GP (YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 234 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| C179R | % Freq | CORP | |
|---|---|---|---|
| 1 | C | 79.88 | 0.347 |
| 2 | R | 20.12 | 0.693 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR9Q2.aApr07-unspliced | main_exon | CDS | chr11 | 58,190,491 | 58,191,432 | + |
| 3UTR | chr11 | 58,191,432 | 58,191,435 | + | ||