OR9R1P Olfactory Receptor
| Gene Symbol | OR9R1P1 (View this gene in GeneCards) |
| Family | 9 |
| Subfamily | R |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR12-5, HsOR12.5.3P, ORL3667 |
| External Ids | HGNC: 15340 GeneBank: BK004577, NG_004176 ORDB: ORL3667 |
| Build #39 labels | OR9R1P |
| Chromosomal location | 12:55,158,847-55,159,800 (+) |
| Cluster | 12@56 |
| Synteny | CLIC#31 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR9H1P | 49.5% | 301 |
| OR9K1P | 53.97% | 302 |
| OR9K2 | 52.98% | 302 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR9R3 | 76% | 315 |
| Mouse | Or9r3 | 77% | 315 |
| Rat | Or9r3 | 74% | 315 |
| Cow | OR9R3 | 79% | 315 |
| Orang | OR9K1 | 53% | 309 |
| Horse | OR9R10 | 73% | 311 |
| Chimp | OR9K1P | 53% | 309 |
Sequence information
| Nucleotide sequence |
ATGAAGAGCGAACTGAACAGGAATTACTCAGAGGTGACAGAGTTTATTCTGCTGGGATTC AGAACATCGCCAGAAGCACAGATTCTCTTATTCTTCCTGTTCTTGCTTATCTACATGGTC ATTGTGTTGAGAAATCTCAGCATGTTAGTTGTCATTGAAATAGACTCCAGACTTCACACA CCTGTGTATTTCTTTCTCAGAAATTTGTCCTATTTGGATCTCCGCTACTCCACAGTTATT GCTTCCAAAACTGACTACTTTATTTTCCAAGGAAAAGAAAATTTCTTACAATGGTTGAGC AACACAGTTGTTTTTCTTTGCTCTCTTTGTTGGGACTGAAGGTTTTTTTCTGGATATGAT GGCATATGATCGCTTCTCAGCTATTTGTTCACCTTTCTTCTATACTGTATGTATGTCTCA GCAAGCTTGTGTTTGTTTGGTGGTTGGCTCCTCTATCTGTGGATGCATCAACTCCATGAT ACAAACAGGTTTTACCTTCAGTTTGCATTTCTGTGGAGAAAACAGATTAGAGCACTTTTT CTGTGATGTCTCAGTCATGATCAAGATCTCATGTATTGACATCCTTGTGAATGAGGTAGT ACTGTTTATTCTCTCTGCTCTCATCACCACCACCACAACTGTCATTCTGGCTTCCTATGT GCATATCCTCTCCACTGTCCTGAAGATTCTCTCAACCCACGGCAGAAGGAAGACTTTCTC CACTTGCAGCTCTCACATCACTGTGGTGAGTTTATTCTATGGAACTGTATTCTTCATGTA TGCCCAACCTGGGGCCATCTCCAAAGAGCAAGGTTATAGTTGTATTCTAAACTCTTGTCA TCCCTATGTTAAATATCTGATTTATAGTCTAAGAAATAGGTGCAAAATGCTTTGAAAAGG ACATTGATAAGAAAAATATCTTTTCATTGGCCTCTAGCCATCTATAAAACTATA |
| Conceptual translation |
MKSELNRNYSEVTEFILLGFRTSPEAQILLFFLFLLIYMVIVLRNLSMLVVIEIDSRLHT PVYFFLRNLSYLDLRYSTVIA\KLTTLFSKEKKISYNGXTQLFFFALFVGTEGFFLDM MAYDRFSAICSPFFYTVCMSQQACVCLVVGSSICGCINSMIQTGFTFSLHFCGENRLEHF FCDVSVMIKISCIDILVNEVVLFILSALITTTTTVILASYVHILSTVLKILSTHGRRKTF STCSSHITVVSLFYGTVFFMYAQPGA\PKSKVIVVFXLVIPMLN/LIYSLRNRCK/ ALKRTLIRKISFHWPLAIYKTI Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
| 12 | 55,159,083 | 55,159,083 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 12 | 55,159,218 | 55,159,218 | SNP | G/A | 1000GP (CEU) | |
| 12 | 55,159,372 | 55,159,372 | SNP | A/T | 1000GP (CEU) | |
| 12 | 55,159,413 | 55,159,413 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 12 | 55,159,666 | 55,159,666 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 12 | 55,552,867 | 55,552,867 | SNP | C/T | rs7953322 (DbSNP) | |
| 12 | 55,552,897 | 55,552,896 | Ins(1) | -/T | rs59012272 (DbSNP) | |
| 12 | 55,552,898 | 55,552,897 | Ins(1) | -/T | rs72418280 (DbSNP) | |
| 12 | 55,553,002 | 55,553,002 | SNP | A/G | rs73317272 (DbSNP) | |
| 12 | 55,553,156 | 55,553,156 | SNP | A/T | rs12316182 (DbSNP) | |
| 12 | 55,553,197 | 55,553,197 | SNP | A/T | rs61595650 (DbSNP) | |
| 12 | 55,553,450 | 55,553,450 | SNP | C/T | rs11171337 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.