Function Genomics Analysis with Bioconductor

Rory Stark & Federico Giorgi

Cancer Research UK Cambridge Institute

Nov 22-24, 9:00-16:30

Botnar (Nov 22) & Lopatie (Nov 23-24)

Day 1:

1. AM: Introduction to functional genomics (RS)
2. AM: Experimental design (RS)
3. PM: Experimental platforms: microarrays and high-thoughput sequencing (FG/RS)
4. PM: Accessing and manipulating genomic data and annotations in Bioconductor (FG/RS)

Day 2:

1. AM: RNA-seq analysis in Bioconductor Ib (FG)
2. AM: RNA-seq practical I (FG)
3. AM: RNA-seq analysis II (FG)
4. PM: RNA-seq Practical II (FG)
5. PM: RNA-seq analysis III (annotation + downstream) (FG)
6. PM: Advanced RNA-seq analysis — multi factor designs (if time) (FG)

Day 3:

1. AM: ChIP-seq analysis (RS)
2. AM: ChIP-seq practical (RS)
3. AM: Advanced ChIP-seq: differential binding analysis (RS)
4. PM: Differential binding analysis practical (RS)
5. PM: Introduction to network analysis (FG)

The bioconductor course is sponsored by the Azrieli Institute for System Biology