OR10AC1P Olfactory Receptor
| Gene Symbol | OR10AC1P1 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | AC |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR7-5, HsOR7.6.5P, ORL3187 |
| External Ids | HGNC: 14758 GeneBank: AB065605, BK004748, NG_004374 ORDB: ORL3187 |
| Build #39 labels | OR10AC1P |
| Chromosomal location | 7:143,510,957-143,511,911 (-) |
| Cluster | 7@143b |
| Synteny | CLIC#16 |
| Remarks | Segregating Pseudo Gene, a polymorphism of 1 bp insertion (G) at position 267 |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10AH1P | 47.62% | 315 |
| OR10W1 | 45% | 300 |
| OR10Z1 | 44.73% | 313 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10AC1 | 86% | 317 |
| Mouse | Or10ac1 | 85% | 316 |
| Rat | Or10ac1 | 85% | 316 |
| Cow | OR10AC1 | 82% | 317 |
| Orang | OR10AC1 | 97% | 318 |
| Horse | OR10AC1 | 89% | 313 |
| Chimp | OR10AC1 | 97% | 318 |
Sequence information
| Nucleotide sequence |
ATGGACAGTCCCAGCAATGCCACCGTGCCCTGTGGCTTTCTCCTTCAAGGCTTCTCCGAA TTCCCGCACCTGAGACCCGTGCTCTTCCTTTTGCTGCTGGGGGTGCACCTGGCCACCCTG GGCGGGAACCTGCTCATCCTGGTGGCCGTGGCCTCGATGCCAAGCCGGCAGCCCATGCTG CTCTTCCTGTGCCAGCTGTCAGCCATCGAGCTGTGCTACACGCTGGTGGTGGTGCCCCGC TCCCTGGTCGACCTGAGCACGCCGGGGCCACCGCAGGGGCAGCCCTATCTCCTTCCTGAG CTGCGCCTTTCAGATGCAGATGTTTGTGGCTCTGGGCGGGGCCGAGTGCTTCCTGCTGGC CGCCATGGCCTATGACCGCTACGTGGCCATCTGCCACCCGTTGCGCTACGCGGCCGTGGT GACCCCCGGGCTGTGCGCGCGACTGGCTCTGGCCTGCTGCCTCAGGGGACTGGCGGTGTC CGTGGGGCTCACGGTGGCCATCTTCCACCTGCCTTTCTGCGGCTCCCGCCTGCTGCTGCA CTTCTTCTGCGACATCACGGCGCTGCTGCACCTGGCCTGCACGCGGAGCTACGCCGACGA GCTGCCTCTGCTGGGCGCCTGCCTGGTGCTGCTGCTGCTGCCCTCGGTGCTCATCCTGGC CTCCTATGGCGCCATCGCCGCCGCCCTGCGCCGCCTGCGCTGCCCCAAAGGCCGGGGCAA GGCCGCCTCCACCTGCGCCTTGCACCTGGCAGTCACCTTCCTGCACTACGGCTGCGCCAC CTTCATGTACGTGCGGCCCAGGGCCAGCTACTCCCCGCGCCTGGACCGCACCCTGGCGCT GGTCTACACCAACGTCACGCCGCTGCTGTGCCCACTCATCTACAGCCTGCGCAACCGCGA GATCACCGCCGCCCTGAGCAGGGTGCTGGGGCGCCGGCGGCCAGGCCAAGCTCCA |
| Conceptual translation |
MDSPSNATVPCGFLLQGFSEFPHLRPVLFLLLLGVHLATLGGNLLILVAVASMPSRQPML LFLCQLSAIELCYTLVVVPRSL\TXRRGHRRGSPISFLSCAFQMQMFVALGGAECFLL AAMAYDRYVAICHPLRYAAVVTPGLCARLALACCLRGLAVSVGLTVAIFHLPFCGSRLLL HFFCDITALLHLACTRSYADELPLLGACLVLLLLPSVLILASYGAIAAALRRLRCPKGRG KAASTCALHLAVTFLHYGCATFMYVRPRASYSPRLDRTLALVYTNVTPLLCPLIYSLRNR EITAALSRVLGRRRPGQAP Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 7 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 7 | 143,208,135 | 143,208,135 | SNP | C/T | rs2949757 (DbSNP) | |
| 7 | 143,208,214 | 143,208,214 | SNP | C/A | rs2966699 (DbSNP) | |
| 7 | 143,208,225 | 143,208,225 | SNP | A/G | rs10260451 (DbSNP) | |
| 7 | 143,208,541 | 143,208,541 | SNP | C/T | rs7809591 (DbSNP) | |
| 7 | 143,208,741 | 143,208,741 | Del(1) | -/C | rs34333193 (DbSNP) | |
| 7 | 143,208,968 | 143,208,968 | SNP | A/G | rs17382409 (DbSNP) | |
| 7 | 143,511,041 | 143,511,041 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 7 | 143,511,042 | 143,511,042 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 7 | 143,511,121 | 143,511,121 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 7 | 143,511,132 | 143,511,132 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 7 | 143,511,689 | 143,511,689 | SNP | G/C | 1000GP (CEU) | |
| 7 | 143,511,875 | 143,511,875 | SNP | A/G | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 7 | 143,147,775 | 144,368,638 | CopyNumber | Variation_3708 (DGV) |
| 7 | 143,187,445 | 143,246,272 | CopyNumber | Variation_4568 (DGV) |
| 7 | 143,206,050 | 143,209,104 | Deletion | #268 (Waszak) |
| 7 | 143,208,034 | 143,736,035 | CopyNumber | Variation_5247 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.