OR10AE3P Olfactory Receptor
| Gene Symbol | OR10AE3P1 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | AE |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | |
| External Ids | HGNC: 31235 GeneBank: NG_004401 |
| Build #39 labels | OR10AE3P |
| Chromosomal location | 12:55,646,195-55,646,663 (-) |
| Cluster | 12@56 |
| Synteny | CLIC#31 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10A5 | 32.22% | 180 |
| OR10C1 | 33.51% | 185 |
| OR10P1 | 33.33% | 183 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Mouse | Or10p22 | 45% | 177 |
| Rat | Or10p22 | 42% | 177 |
| Cow | OR10P25 | 41% | 183 |
| Horse | OR10P22P | 45% | 177 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | DB074224 |
Sequence information
| Nucleotide sequence |
ATGACTGAGCTTGTTTTGTTGGTGCTCTCAGGTTTTGGTTCCGTCCGGGGCCTTCTGTTT TGGGCAGTGCTCTGCAAACATCTGGTGACCCTGCTGGACAACTCCCTGATCGTCGTCCTC GCCCTGGCAGCCTCTGCCTGCGCTGGCCCACGCACTTCCTCCTGCACCACTTCTCCTTAG GGGAGGTCCCACGCCACAGCGGCGGAGTCTCGGATGCAGGCCGATTCCCTTCCCCCGCCG CACTAGCCCACCGGTAGGCGGCTTCCCGCTGCTGGGTTTCTTCGCCCTCCCTGGCATCGC CGAATGCGCTTGCGCAGGGCCATGGCCTCCGCCGCTGTGACGCCATCTGCCGGCCGCTGC ATTCTACTACCTGAGGAGCCCTAGTCTTCCGAGCCCGCTTCGCCTTCACCTTGCCCTTCT GCGGCGCAGCACCACCCGCTACTTCCGGCTGGATTCTCGGCCTGTGCTG |
| Conceptual translation |
MTELVLLVLSGFGSVRGLLFWAVLCKHLVTLLDNSLIVVLALAAS/LRWPTHFLLHHFS LGEVPRHSGGVSDAGRFPSPAALAHRX/FPLLGFFALPGIAEC/LRRAMA/RRCDA ICRPLHSTTXALVFRARFAFTLPFCGA/TTRYFRLDSRPVL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI) | |
| 12 | 55,646,417 | 55,646,417 | SNP | G/C | 1000GP (CEU) | |
| 12 | 55,646,433 | 55,646,433 | SNP | A/G | 1000GP (CHBJPT) | |
| 12 | 55,646,493 | 55,646,493 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 12 | 55,646,603 | 55,646,603 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 12 | 55,646,617 | 55,646,617 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 12 | 56,040,277 | 56,040,277 | SNP | A/C | rs11171636 (DbSNP) | |
| 12 | 56,040,387 | 56,040,387 | SNP | A/G | rs11171637 (DbSNP) | |
| 12 | 56,040,401 | 56,040,401 | SNP | C/T | rs11171638 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 180 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.