OR10AG1 Olfactory Receptor
Gene Symbol | OR10AG11 (View this gene in GeneCards) |
Family | 10 |
Subfamily | AG |
Pseudogene | No |
CORP pseudogene probability score | 0.03 (functional) |
Aliases | OR11-160, HsOR11.11.37 |
External Ids | HGNC: 19607 GeneBank: AB065594, BK004519, NM_001005491 |
Build #39 labels | OR10AG1 |
Chromosomal location | 11:55,967,561-55,968,463 (-) |
Cluster | 11@56 |
Synteny | CLIC#26 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR10A7 | 47.81% | 297 |
OR10C1 | 48.15% | 297 |
OR10R3P | 46.8% | 297 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR10AG64 | 68% | 295 |
Mouse | Or10ag2 | 75% | 300 |
Rat | Or10ag2 | 74% | 300 |
Cow | OR10AG65 | 66% | 301 |
Orang | OR10A5 | 49% | 300 |
Horse | OR10AG104P | 77% | 296 |
Chimp | OR10AG1P | 97% | 290 |
Expression evidences
Source | Accession |
---|---|
mRNA | AB529272 |
GNF Atlas2 | gnf1h05460_at |
Sequence information
Nucleotide sequence |
ATGGAATTTGTTCTTTTGGGGTTTTCTGATATTCCCAATCTCCACTGGATGCTTTTTAGT ATATTTTTACTTATGTATTTGATGATCCTGATGTGCAATGGCATCATAATACTACTAATA AAAATTCACCCCGCTCTCCAGACTCCCATGTATTTTTTTCTTAGCAATTTTTCCCTTTTG GAAATCTGTTATGTAACAATCATTATCCCAAGAATGCTCATGGACATTTGGACTCAGAAA GGAAATATTTCTTTGTTTGCTTGTGCTACACAAATGTGTTTTTTTCTTATGCTTGGAGGC ACGGAGTGTCTCCTTCTGACAGTGATGGCCTATGACCGCTACGTGGCTATTTGTAAGCCT TTGCAGTATCCTCTAGTGATGAACCACAAAGTCTGCATTCAGCTGATAATAGCTTCCTGG ACCATCACAATTCCTGTAGTAATTGGGGAAACATGCCAAATTTTCCTTTTGCCCTTTTGC GGAACTAACACAATTAATCATTTCTTTTGTGACATCCCGCCAATACTCAAGCTTGCTTGT GGAAACATATTTGTGAATGAGATAACAGTCCATGTAGTAGCGGTGGTGTTTATCACGGTG CCATTTCTGTTGATTGTTGTCTCTTATGGCAAAATTATCTCCAACATTTTGAAATTGTCA TCAGCCAGAGGAAAGGCTAAAGCCTTCTCCACCTGCTCATCTCACCTAATAGTTGTAATC TTATTCTTTGGAGCAGGTACTATCACTTATTTACAGCCCAAACCACATCAGTTTCAAAGG ATGGGGAAACTGATTTCTCTTTTCTACACCATTCTGATTCCAACTTTGAATCCTATTATA TATACCCTGAGGAACAAAGATATCATGGTGGCATTGAGAAAATTACTAGCTAAGTTATTA ACA |
Conceptual translation |
MEFVLLGFSDIPNLHWMLFSIFLLMYLMILMCNGIIILLIKIHPALQTPMYFFLSNFSLL EICYVTIIIPRMLMDIWTQKGNISLFACATQMCFFLMLGGTECLLLTVMAYDRYVAICKP LQYPLVMNHKVCIQLIIASWTITIPVVIGETCQIFLLPFCGTNTINHFFCDIPPILKLAC GNIFVNEITVHVVAVVFITVPFLLIVVSYGKIISNILKLSSARGKAKAFSTCSSHLIVVI LFFGAGTITYLQPKPHQFQRMGKLISLFYTILIPTLNPIIYTLRNKDIMVALRKLLAKLL T Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 55,735,649 | 55,735,649 | NS | A/C | I/M | rs61896167 (DbSNP) |
11 | 55,735,518 | 55,735,518 | NS | A/G | I/T | rs61896165 (DbSNP) |
11 | 55,735,579 | 55,735,579 | SYN | A/G | L/L | rs61896166 (DbSNP) |
11 | 55,735,106 | 55,735,106 | SYN | A/G | P/P | rs61896163 (DbSNP) |
11 | 55,735,280 | 55,735,280 | SYN | A/T | S/S | rs61896164 (DbSNP) |
11 | 55,735,091 | 55,735,091 | SYN | C/T | L/L | rs12292026 (DbSNP) |
11 | 55,968,337 | 55,968,337 | NS | G/C | H/D | 1000GP (CEU) |
11 | 55,967,797 | 55,967,797 | NS | T/C | R/G | 1000GP (CEU) |
11 | 55,968,173 | 55,968,173 | NS | C/A | M/I | 1000GP (CEU) |
11 | 55,968,042 | 55,968,042 | NS | G/A | T/I | 1000GP (CEU) |
11 | 55,968,103 | 55,968,103 | SYN | A/G | L/L | 1000GP (CEU) |
11 | 55,967,937 | 55,967,937 | NS | A/G | L/P | 1000GP (CEU) |
11 | 55,967,630 | 55,967,630 | SYN | A/G | P/P | 1000GP (CEU) |
11 | 55,968,332 | 55,968,332 | SYN | G/A | P/P | 1000GP (CEU) |
11 | 55,967,804 | 55,967,804 | SYN | T/A | S/S | 1000GP (CEU) |
11 | 55,968,372 | 55,968,372 | NS | A/G | M/T | 1000GP (CEU) |
11 | 55,968,381 | 55,968,381 | NS | A/G | M/T | 1000GP (CEU) |
11 | 55,967,872 | 55,967,872 | NS | T/A | I/F | 1000GP (CHBJPT) |
11 | 100 | -100 | SYN | C/T | L/L | 1000GP (YRI, YRI, YRI) |
11 | 100 | -100 | NS | G/A | T/I | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
11 | 55,710,709 | 55,787,839 | CopyNumber | Variation_1245 (DGV) |
11 | 55,689,863 | 55,849,156 | CopyNumber | Variation_2927 (DGV) |
11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
11 | 55,685,799 | 55,842,512 | CopyNumber | Variation_9189 (DGV) |
11 | 55,685,556 | 55,819,544 | CopyNumber | Variation_29912 (DGV), Variation_48846 (DGV) |
11 | 55,685,556 | 55,796,170 | CopyNumber | Variation_48845 (DGV) |
11 | 55,685,556 | 55,836,620 | CopyNumber | Variation_48847 (DGV) |
11 | 55,683,109 | 55,833,490 | CopyNumber | Variation_85786 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
V239A | V192I | L176P | T141I | M97I | H43D | M31T | M28T | % Freq | CORP | |
---|---|---|---|---|---|---|---|---|---|---|
1 | V | V | L | T | M | H | M | M | 94.09 | 0.078 |
2 | V | V | L | I | I | D | T | T | 3.92 | 0.078 |
3 | A | V | L | T | M | H | M | M | 0.54 | 0.135 |
4 | V | V | L | I | I | H | M | M | 0.54 | 0.078 |
5 | V | I | L | T | M | H | M | M | 0.46 | 0.078 |
6 | V | V | L | I | I | H | T | T | 0.15 | 0.078 |
7 | V | V | P | I | I | D | M | T | 0.08 | 0.078 |
8 | V | V | L | I | I | D | M | M | 0.08 | 0.078 |
9 | V | V | L | T | I | D | T | T | 0.08 | 0.078 |
10 | V | V | L | T | M | D | T | T | 0.08 | 0.078 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR10AG1.aApr07-unspliced | main_exon | 3UTR | chr11 | 55,967,558 | 55,967,561 | - |
CDS | chr11 | 55,967,561 | 55,968,463 | - |