OR10D1P Olfactory Receptor
| Gene Symbol | OR10D1P1 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | D |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HSHTPCRX03, OST074, OR11-286, HsOR11.18.18P, ORL3474 |
| External Ids | HGNC: 8166 GeneBank: AB065507, AF399438, BK004634, HSHTPRX03, NG_004126 ORDB: ORL3474 |
| Build #39 labels | OR10D1P |
| Chromosomal location | 11:124,158,421-124,159,353 (+) |
| Cluster | 11@124 |
| Synteny | CLIC#29 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10D4P | 71.77% | 294 |
| OR10D5P | 68.65% | 303 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10D1K | 91% | 311 |
| Mouse | Or10d1 | 90% | 311 |
| Rat | Or10d1 | 90% | 311 |
| Cow | OR10D1 | 91% | 310 |
| Orang | OR10D1 | 89% | 310 |
| Orang | OR10D1N | 87% | 311 |
| Horse | OR10D1 | 89% | 311 |
| Horse | OR10D1O | 86% | 310 |
| Chimp | OR10D1 | 97% | 311 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529259 |
Sequence information
| Nucleotide sequence |
ATGAGGAATTTCTCGGTGGTGTCCGAATTCATCCTGCTGGGCATCCCTCACACGGAGGGT CTGGAGACTATTCTGTTGGTCCTGTTTTTGTCCTTCTACATCTTCACCCTTATGGGGAAC CTGCTCATCTTGCTGGCTATTGTCTCCTCTGCTCGGCTTCACACGCCCATGTACTTCTTC CTGTGCAAGCTGTCTGTTTTTGACCTATTTTTCCCTTCTGTGAGTTCCCCTAAGATGCTG TGCTATCTTTCAGGGAACAGCCGAGCCATCTCCTATGCAGGCTGTGCATCCCAGCTCTTC TTCTACCATTTCCTGGGCTGCACTGAGTGTTTCCTGTACACGGTGATGGCCTACGACCGC TTTGTTGCCATTTGTCACCCTCTACGCTACACCATAATCATGAGCCACAGAGCATGTATC ATCCTAGCCATGGGGACCTCATTCTTTGGCTGCATTCAGGCCACCTTTCTGACCACTCTC ACCTTCCAATTGCCTTACTGTGTCCCCAATGAGGTGGACTATTATTTCTGTGATATCCCA GTCATGCTGAAGCTGGCTTGTGCAGATACCTCAGCCCTGGAGATGGTGGGGTTCATCAGT GTGGGCCTCATGCCCCTCAGCTGTTTCCTTCTCATCCTCACCTCCTACAGTGGCATCGTC TTCTCCATCTTGTAGATCTGCTCTGCCGAGGGCCGACGCCGTGCCTTCTCCACCTGCAGC GCCCACCTCACCGCCATCCTGCTTTTTTACATGCCAGTGGTCCTCATTTACCTGAGGCCT ACCCACAGCCTGTGGTTGGATGCAACTGTTCAAATTCTGAATAACCTGGTCACCCCCATG CTGAACCCCTTAATCTACAGTCTCAGGAATAAGGAGGTGAAATTATCACTAAGGAAGGTC TTATATCAGCTGGGCTTCCTTCCTGAGCAGTTG |
| Conceptual translation |
MRNFSVVSEFILLGIPHTEGLETILLVLFLSFYIFTLMGNLLILLAIVSSARLHTPMYFF LCKLSVFDLFFPSVSSPKMLCYLSGNSRAISYAGCASQLFFYHFLGCTECFLYTVMAYDR FVAICHPLRYTIIMSHRACIILAMGTSFFGCIQATFLTTLTFQLPYCVPNEVDYYFCDIP VMLKLACADTSALEMVGFISVGLMPLSCFLLILTSYSGIVFSILXCSAEGRRRAFSTCS AHLTAILLFYMPVVLIYLRPTHSLWLDATVQILNNLVTPMLNPLIYSLRNKEVKLSLRKV LYQLGFLPEQL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
| 11 | 124,029,292 | 124,029,292 | SNP | G/A | rs1893011 (DbSNP) | |
| 11 | 124,029,541 | 124,029,541 | SNP | A/G | rs4936896 (DbSNP) | |
| 11 | 124,029,636 | 124,029,636 | SNP | A/G | rs17128469 (DbSNP) | |
| 11 | 124,158,505 | 124,158,505 | SNP | T/C | 1000GP (CEU) | |
| 11 | 124,158,585 | 124,158,585 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 124,158,778 | 124,158,778 | SNP | C/T | 1000GP (CHBJPT) | |
| 11 | 124,158,834 | 124,158,834 | SNP | A/G | 1000GP (CEU, CHBJPT) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR10D1P.aApr07-unspliced | main_exon | CDS_partial | chr11 | 124,158,789 | 124,159,131 | + |